Results 21 - 40 of 346 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25914 | 3' | -58.9 | NC_005337.1 | + | 6141 | 0.74 | 0.343027 |
Target: 5'- aGCGCguuucGCGCGUUCaCGCGGcagCCGCGCa -3' miRNA: 3'- -CGCG-----UGUGCAGG-GCGUCaa-GGCGCGc -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 131421 | 0.74 | 0.349842 |
Target: 5'- gGCGCGCGgcuccgcggacucCGUCuCCGCGGaggCCGCGCu -3' miRNA: 3'- -CGCGUGU-------------GCAG-GGCGUCaa-GGCGCGc -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 109538 | 0.74 | 0.355981 |
Target: 5'- gGCGCgauggcgguguaggGCGCGUaCCCGCGGaacUCCGCGgGg -3' miRNA: 3'- -CGCG--------------UGUGCA-GGGCGUCa--AGGCGCgC- -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 61406 | 0.74 | 0.358302 |
Target: 5'- gGCGUGCACGUCCaGCAGgUUCGCGg- -3' miRNA: 3'- -CGCGUGUGCAGGgCGUCaAGGCGCgc -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 95395 | 0.74 | 0.366117 |
Target: 5'- aCGCGCGCGaacUCCgaGCAGaaCCGCGCGu -3' miRNA: 3'- cGCGUGUGC---AGGg-CGUCaaGGCGCGC- -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 50766 | 0.73 | 0.374048 |
Target: 5'- gGCGCACGCGU---GCGGUUCC-CGCGg -3' miRNA: 3'- -CGCGUGUGCAgggCGUCAAGGcGCGC- -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 89357 | 0.73 | 0.374048 |
Target: 5'- cGCGgACACGuguccacgaucUCCCGCAGcaUCCGUGCc -3' miRNA: 3'- -CGCgUGUGC-----------AGGGCGUCa-AGGCGCGc -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 75626 | 0.73 | 0.374048 |
Target: 5'- gGCGCGCGUGUCCCGCG----UGCGCGa -3' miRNA: 3'- -CGCGUGUGCAGGGCGUcaagGCGCGC- -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 12494 | 0.73 | 0.374048 |
Target: 5'- cCGCACcgGCGUCCaGCAGcagCCGCGUGa -3' miRNA: 3'- cGCGUG--UGCAGGgCGUCaa-GGCGCGC- -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 50903 | 0.73 | 0.382095 |
Target: 5'- gGCGCGCGCG-CCCaGCGGccggUCCGCaGCc -3' miRNA: 3'- -CGCGUGUGCaGGG-CGUCa---AGGCG-CGc -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 95448 | 0.73 | 0.390256 |
Target: 5'- gGCGUACGCGUCCagCGCGGcguagcgccCCGUGCGc -3' miRNA: 3'- -CGCGUGUGCAGG--GCGUCaa-------GGCGCGC- -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 29786 | 0.73 | 0.390256 |
Target: 5'- uGCGCgaGCGCGUa--GCAGcgCCGCGCGa -3' miRNA: 3'- -CGCG--UGUGCAgggCGUCaaGGCGCGC- -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 109261 | 0.73 | 0.390256 |
Target: 5'- cGCGCGCACGUCgaaGCGGUggaagcuguccaUgCGCGCGu -3' miRNA: 3'- -CGCGUGUGCAGgg-CGUCA------------AgGCGCGC- -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 77326 | 0.73 | 0.395207 |
Target: 5'- -gGUACAgGUCCCGCGGcgagauggccgccUCCGCGCu -3' miRNA: 3'- cgCGUGUgCAGGGCGUCa------------AGGCGCGc -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 108822 | 0.73 | 0.39853 |
Target: 5'- aCGCACGCGUCCaCGguGccgaagCGCGCGg -3' miRNA: 3'- cGCGUGUGCAGG-GCguCaag---GCGCGC- -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 7099 | 0.73 | 0.39853 |
Target: 5'- uCGUACGCGUCagacuCGCGGacgUCCGCGCc -3' miRNA: 3'- cGCGUGUGCAGg----GCGUCa--AGGCGCGc -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 41745 | 0.73 | 0.406916 |
Target: 5'- cGCGCAcCGCGUCCaugggGCGG--CCGCGCa -3' miRNA: 3'- -CGCGU-GUGCAGGg----CGUCaaGGCGCGc -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 16920 | 0.73 | 0.406916 |
Target: 5'- cGUGCGCACGUCCaCGCGGccgacguuggCCGuCGCc -3' miRNA: 3'- -CGCGUGUGCAGG-GCGUCaa--------GGC-GCGc -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 2848 | 0.73 | 0.406916 |
Target: 5'- cGCGgAgACGgagUCCGCGGagCCGCGCGc -3' miRNA: 3'- -CGCgUgUGCa--GGGCGUCaaGGCGCGC- -5' |
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25914 | 3' | -58.9 | NC_005337.1 | + | 87826 | 0.73 | 0.412852 |
Target: 5'- uCGCACGCGUCCgCGUAcgcGUuguacaggaucccgUCCGUGCGg -3' miRNA: 3'- cGCGUGUGCAGG-GCGU---CA--------------AGGCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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