miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25914 5' -55.3 NC_005337.1 + 92546 0.72 0.643292
Target:  5'- cGGUGCGCGAGCUcGccuccugguucuUCGaGGA-CGGCCg -3'
miRNA:   3'- -UCGCGUGCUUGAaC------------AGC-CCUaGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 123858 0.71 0.663837
Target:  5'- cGUGCAUGGACgg--CGGGcgCGGCg -3'
miRNA:   3'- uCGCGUGCUUGaacaGCCCuaGCCGg -5'
25914 5' -55.3 NC_005337.1 + 76200 0.71 0.663837
Target:  5'- cGcCGC-CGAGCUUGuccacgagguccUCGGGGUUGGCg -3'
miRNA:   3'- uC-GCGuGCUUGAAC------------AGCCCUAGCCGg -5'
25914 5' -55.3 NC_005337.1 + 35222 0.71 0.674075
Target:  5'- aAGCGCACGAAg--GUCaGG-UCGGCg -3'
miRNA:   3'- -UCGCGUGCUUgaaCAGcCCuAGCCGg -5'
25914 5' -55.3 NC_005337.1 + 49578 0.71 0.694438
Target:  5'- cAGCGC-CGggUccGU-GGGAUCGGCg -3'
miRNA:   3'- -UCGCGuGCuuGaaCAgCCCUAGCCGg -5'
25914 5' -55.3 NC_005337.1 + 88039 0.71 0.694438
Target:  5'- cGGCGCACGuGCa---CGGGGUCGuGCUg -3'
miRNA:   3'- -UCGCGUGCuUGaacaGCCCUAGC-CGG- -5'
25914 5' -55.3 NC_005337.1 + 84208 0.7 0.714591
Target:  5'- cGGaCaCACGGGCUgcUGUgCGGGcgCGGCCu -3'
miRNA:   3'- -UC-GcGUGCUUGA--ACA-GCCCuaGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 64377 0.7 0.714591
Target:  5'- cGCGCAgGAGCacgUUGUCGGag-CGGCg -3'
miRNA:   3'- uCGCGUgCUUG---AACAGCCcuaGCCGg -5'
25914 5' -55.3 NC_005337.1 + 50379 0.7 0.714591
Target:  5'- cGgGCACGGGCgccUGgcgCGGGggCGcGCCg -3'
miRNA:   3'- uCgCGUGCUUGa--ACa--GCCCuaGC-CGG- -5'
25914 5' -55.3 NC_005337.1 + 127918 0.7 0.723571
Target:  5'- cGGUGCGgacgucaacgcggUGGACUUGUaCGGGAUgacgucgcUGGCCg -3'
miRNA:   3'- -UCGCGU-------------GCUUGAACA-GCCCUA--------GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 37515 0.7 0.734459
Target:  5'- aAGCGCuCGGACUUcUCGuGGAUggCGGCg -3'
miRNA:   3'- -UCGCGuGCUUGAAcAGC-CCUA--GCCGg -5'
25914 5' -55.3 NC_005337.1 + 7849 0.7 0.734459
Target:  5'- uGCGCGgGAGCguggaGUCcaGGUCGGCCg -3'
miRNA:   3'- uCGCGUgCUUGaa---CAGccCUAGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 3250 0.7 0.734459
Target:  5'- cGCGCACGc-CUUGUCGuugcGGugcgcggCGGCCa -3'
miRNA:   3'- uCGCGUGCuuGAACAGC----CCua-----GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 28881 0.7 0.744263
Target:  5'- cGCGCGCGAGugguccgUGUUGaGGAUgcUGGCCu -3'
miRNA:   3'- uCGCGUGCUUga-----ACAGC-CCUA--GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 334 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 273 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 212 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 151 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 90 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 395 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.