Results 1 - 20 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25914 | 5' | -55.3 | NC_005337.1 | + | 98437 | 1.12 | 0.002126 |
Target: 5'- cAGCGCACGAACUUGUCGGGAUCGGCCu -3' miRNA: 3'- -UCGCGUGCUUGAACAGCCCUAGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 80221 | 0.88 | 0.07976 |
Target: 5'- gAGCGCGCGcACgcgGUCGGGGUCGGCg -3' miRNA: 3'- -UCGCGUGCuUGaa-CAGCCCUAGCCGg -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 95570 | 0.81 | 0.208654 |
Target: 5'- uGGCgaGCACGGACgggcaGUcCGGGGUCGGCCg -3' miRNA: 3'- -UCG--CGUGCUUGaa---CA-GCCCUAGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 130538 | 0.77 | 0.36744 |
Target: 5'- uGCGCGCGGGCgccaacGUcaacgaCGGGAUCGGCUu -3' miRNA: 3'- uCGCGUGCUUGaa----CA------GCCCUAGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 37097 | 0.76 | 0.409473 |
Target: 5'- cAGCGUGCGGAagUUGUCGGGG--GGCCu -3' miRNA: 3'- -UCGCGUGCUUg-AACAGCCCUagCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 121989 | 0.75 | 0.436087 |
Target: 5'- cGUGCGCGAGCUccUGcgcgCGGGGUgcgaccCGGCCg -3' miRNA: 3'- uCGCGUGCUUGA--ACa---GCCCUA------GCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 19156 | 0.75 | 0.436087 |
Target: 5'- uGUGCACGcACaUGUCGGcGA-CGGCCa -3' miRNA: 3'- uCGCGUGCuUGaACAGCC-CUaGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 111533 | 0.75 | 0.445178 |
Target: 5'- cGCGCuccgccGCGuGCagGUCGGGGUCGGCg -3' miRNA: 3'- uCGCG------UGCuUGaaCAGCCCUAGCCGg -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 28947 | 0.75 | 0.463672 |
Target: 5'- aGGCGCAgGAGgUUGUUGGuGuucuugacgccGUCGGCCg -3' miRNA: 3'- -UCGCGUgCUUgAACAGCC-C-----------UAGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 5157 | 0.74 | 0.531294 |
Target: 5'- uGCaGCGCGGACUUGUCGaag-UGGCCg -3' miRNA: 3'- uCG-CGUGCUUGAACAGCccuaGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 19309 | 0.73 | 0.551294 |
Target: 5'- uAGCGU-CGAACUUGUUGGGGaagUCugcgauGGCCa -3' miRNA: 3'- -UCGCGuGCUUGAACAGCCCU---AG------CCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 2192 | 0.73 | 0.551294 |
Target: 5'- cGGCGCaggcgGCGGACg---CGGGcgCGGCCc -3' miRNA: 3'- -UCGCG-----UGCUUGaacaGCCCuaGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 35065 | 0.73 | 0.584758 |
Target: 5'- uGCGCGCGAagaagccGC-UGUCGGGGcccuggcgcugcaugUCGGUCu -3' miRNA: 3'- uCGCGUGCU-------UGaACAGCCCU---------------AGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 111194 | 0.72 | 0.612428 |
Target: 5'- cGCGCACGA---UGcCGGGcaCGGCCg -3' miRNA: 3'- uCGCGUGCUugaACaGCCCuaGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 94543 | 0.72 | 0.61654 |
Target: 5'- gGGUGCAgGAacuccgagucgaugcGCUUGaUGGGcgCGGCCa -3' miRNA: 3'- -UCGCGUgCU---------------UGAACaGCCCuaGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 60225 | 0.72 | 0.622711 |
Target: 5'- gGGCGCGgGGGCUgggGcUGGGGUCGgaGCCg -3' miRNA: 3'- -UCGCGUgCUUGAa--CaGCCCUAGC--CGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 6484 | 0.72 | 0.622711 |
Target: 5'- cAGCGCGCGGACgaggagGUCG--AUCGGCg -3' miRNA: 3'- -UCGCGUGCUUGaa----CAGCccUAGCCGg -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 121578 | 0.72 | 0.633002 |
Target: 5'- cGCGCGCGGACgccacCGGGAaCGGUa -3' miRNA: 3'- uCGCGUGCUUGaaca-GCCCUaGCCGg -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 58459 | 0.72 | 0.643292 |
Target: 5'- cAGUGCACGAGCg---UGGGcuuuuucUCGGCCu -3' miRNA: 3'- -UCGCGUGCUUGaacaGCCCu------AGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 31158 | 0.72 | 0.643292 |
Target: 5'- cGCGCACGAugccgcACUc--CGGGAggucgaugUCGGCCg -3' miRNA: 3'- uCGCGUGCU------UGAacaGCCCU--------AGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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