Results 1 - 20 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25914 | 5' | -55.3 | NC_005337.1 | + | 76116 | 0.66 | 0.919812 |
Target: 5'- uGCGCACGcGCUUGcgCGcGAa-GGCCg -3' miRNA: 3'- uCGCGUGCuUGAACa-GCcCUagCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 19411 | 0.66 | 0.901751 |
Target: 5'- aGGCGC-CGA---UGUCGGaGAcgCGGUCg -3' miRNA: 3'- -UCGCGuGCUugaACAGCC-CUa-GCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 51131 | 0.66 | 0.919812 |
Target: 5'- gAGCGCaccgacgagcagGCGAACUcGUCguacaaggagguGGGGUCcaaccuGGCCa -3' miRNA: 3'- -UCGCG------------UGCUUGAaCAG------------CCCUAG------CCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 109079 | 0.66 | 0.919812 |
Target: 5'- cAGCGCgACGAACaUGgccgCGGccgaGGCCa -3' miRNA: 3'- -UCGCG-UGCUUGaACa---GCCcuagCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 74180 | 0.66 | 0.919812 |
Target: 5'- aGGCGCGCu--CggGcCGGGAgUCGGCg -3' miRNA: 3'- -UCGCGUGcuuGaaCaGCCCU-AGCCGg -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 9338 | 0.66 | 0.901751 |
Target: 5'- uGCGUccggAgGGACUgcUGUCGGGGUCcaggGGCa -3' miRNA: 3'- uCGCG----UgCUUGA--ACAGCCCUAG----CCGg -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 12696 | 0.66 | 0.901751 |
Target: 5'- cGGCGCGCGuACaUG-CGGuGcUCGGCg -3' miRNA: 3'- -UCGCGUGCuUGaACaGCC-CuAGCCGg -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 122210 | 0.66 | 0.90801 |
Target: 5'- cGgGCGCGGACgUGUCGGcGcgCacGCCg -3' miRNA: 3'- uCgCGUGCUUGaACAGCC-CuaGc-CGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 17278 | 0.66 | 0.90801 |
Target: 5'- uGGCGCACGuugaAGC-UGUCGaGGAUguGCCc -3' miRNA: 3'- -UCGCGUGC----UUGaACAGC-CCUAgcCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 77786 | 0.66 | 0.91462 |
Target: 5'- gGGC-CACGAACUUGgcgauauccuggcgcCGcGGGUCgcuGGCCa -3' miRNA: 3'- -UCGcGUGCUUGAACa--------------GC-CCUAG---CCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 112465 | 0.66 | 0.930651 |
Target: 5'- cGCGCACGAagaGCUgcggcgcGUCGaaggCGGCCc -3' miRNA: 3'- uCGCGUGCU---UGAa------CAGCccuaGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 68255 | 0.66 | 0.90047 |
Target: 5'- cGGCGCGUGGGCgagcGUCGaGGAcuucgacgucugCGGCCg -3' miRNA: 3'- -UCGCGUGCUUGaa--CAGC-CCUa-----------GCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 52029 | 0.66 | 0.922057 |
Target: 5'- cGCGCGCGGucauggaguuccgggACcUG-CGGGAgcugguUCGGCUc -3' miRNA: 3'- uCGCGUGCU---------------UGaACaGCCCU------AGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 32063 | 0.66 | 0.90801 |
Target: 5'- gGGCGUACG----UGUCGGGGUCcGUg -3' miRNA: 3'- -UCGCGUGCuugaACAGCCCUAGcCGg -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 86653 | 0.66 | 0.906777 |
Target: 5'- uGGCGCGCaGAcGCUUGUUGuccgccucgaaGUCGGCCu -3' miRNA: 3'- -UCGCGUG-CU-UGAACAGCcc---------UAGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 40732 | 0.66 | 0.925352 |
Target: 5'- uGCGC-CGGACUcgcGUCucuGGGugcaCGGCCg -3' miRNA: 3'- uCGCGuGCUUGAa--CAG---CCCua--GCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 77513 | 0.66 | 0.901751 |
Target: 5'- gAGCucCACGGGCUUGgucgucgagccCGGGAUCuucgcguaguuGGCCg -3' miRNA: 3'- -UCGc-GUGCUUGAACa----------GCCCUAG-----------CCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 50470 | 0.66 | 0.919812 |
Target: 5'- uGGCGCGCccGACgggUGgCGGGucUCGGUCu -3' miRNA: 3'- -UCGCGUGc-UUGa--ACaGCCCu-AGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 44460 | 0.66 | 0.925352 |
Target: 5'- gAGCGCcucgcCGAGCUggagGccaguUCGaGGcgCGGCCg -3' miRNA: 3'- -UCGCGu----GCUUGAa---C-----AGC-CCuaGCCGG- -5' |
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25914 | 5' | -55.3 | NC_005337.1 | + | 99248 | 0.66 | 0.90801 |
Target: 5'- cGCGCucgccGCGGACggcgacgCGGGGUucggcaCGGCCg -3' miRNA: 3'- uCGCG-----UGCUUGaaca---GCCCUA------GCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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