miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25914 5' -55.3 NC_005337.1 + 37 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 37 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 90 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 90 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 151 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 151 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 212 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 212 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 273 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 273 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 334 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 334 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 395 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 395 0.7 0.753002
Target:  5'- cGGaCGCACGGACggGcugacucgagaacUCGGGAggCGGUCg -3'
miRNA:   3'- -UC-GCGUGCUUGaaC-------------AGCCCUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 854 0.7 0.753968
Target:  5'- aGGCG-GCGGGCagcgCGGGcgCGGCCg -3'
miRNA:   3'- -UCGCgUGCUUGaacaGCCCuaGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 854 0.7 0.753968
Target:  5'- aGGCG-GCGGGCagcgCGGGcgCGGCCg -3'
miRNA:   3'- -UCGCgUGCUUGaacaGCCCuaGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 1137 0.69 0.809591
Target:  5'- cGCGCGCGAccaGCUccgCGGGGagCGcGCCg -3'
miRNA:   3'- uCGCGUGCU---UGAacaGCCCUa-GC-CGG- -5'
25914 5' -55.3 NC_005337.1 + 1916 0.67 0.888529
Target:  5'- uGGUGCAgGAGCgUGUUGcagcGGAagUCGGUCg -3'
miRNA:   3'- -UCGCGUgCUUGaACAGC----CCU--AGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 2083 0.69 0.800676
Target:  5'- aGGCGCACGG---UGUCGGcg-CGcGCCg -3'
miRNA:   3'- -UCGCGUGCUugaACAGCCcuaGC-CGG- -5'
25914 5' -55.3 NC_005337.1 + 2192 0.73 0.551294
Target:  5'- cGGCGCaggcgGCGGACg---CGGGcgCGGCCc -3'
miRNA:   3'- -UCGCG-----UGCUUGaacaGCCCuaGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.