miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25914 5' -55.3 NC_005337.1 + 7849 0.7 0.734459
Target:  5'- uGCGCGgGAGCguggaGUCcaGGUCGGCCg -3'
miRNA:   3'- uCGCGUgCUUGaa---CAGccCUAGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 31158 0.72 0.643292
Target:  5'- cGCGCACGAugccgcACUc--CGGGAggucgaugUCGGCCg -3'
miRNA:   3'- uCGCGUGCU------UGAacaGCCCU--------AGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 58459 0.72 0.643292
Target:  5'- cAGUGCACGAGCg---UGGGcuuuuucUCGGCCu -3'
miRNA:   3'- -UCGCGUGCUUGaacaGCCCu------AGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 76200 0.71 0.663837
Target:  5'- cGcCGC-CGAGCUUGuccacgagguccUCGGGGUUGGCg -3'
miRNA:   3'- uC-GCGuGCUUGAAC------------AGCCCUAGCCGg -5'
25914 5' -55.3 NC_005337.1 + 123858 0.71 0.663837
Target:  5'- cGUGCAUGGACgg--CGGGcgCGGCg -3'
miRNA:   3'- uCGCGUGCUUGaacaGCCCuaGCCGg -5'
25914 5' -55.3 NC_005337.1 + 88039 0.71 0.694438
Target:  5'- cGGCGCACGuGCa---CGGGGUCGuGCUg -3'
miRNA:   3'- -UCGCGUGCuUGaacaGCCCUAGC-CGG- -5'
25914 5' -55.3 NC_005337.1 + 50379 0.7 0.714591
Target:  5'- cGgGCACGGGCgccUGgcgCGGGggCGcGCCg -3'
miRNA:   3'- uCgCGUGCUUGa--ACa--GCCCuaGC-CGG- -5'
25914 5' -55.3 NC_005337.1 + 84208 0.7 0.714591
Target:  5'- cGGaCaCACGGGCUgcUGUgCGGGcgCGGCCu -3'
miRNA:   3'- -UC-GcGUGCUUGA--ACA-GCCCuaGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 127918 0.7 0.723571
Target:  5'- cGGUGCGgacgucaacgcggUGGACUUGUaCGGGAUgacgucgcUGGCCg -3'
miRNA:   3'- -UCGCGU-------------GCUUGAACA-GCCCUA--------GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 121578 0.72 0.633002
Target:  5'- cGCGCGCGGACgccacCGGGAaCGGUa -3'
miRNA:   3'- uCGCGUGCUUGaaca-GCCCUaGCCGg -5'
25914 5' -55.3 NC_005337.1 + 60225 0.72 0.622711
Target:  5'- gGGCGCGgGGGCUgggGcUGGGGUCGgaGCCg -3'
miRNA:   3'- -UCGCGUgCUUGAa--CaGCCCUAGC--CGG- -5'
25914 5' -55.3 NC_005337.1 + 6484 0.72 0.622711
Target:  5'- cAGCGCGCGGACgaggagGUCG--AUCGGCg -3'
miRNA:   3'- -UCGCGUGCUUGaa----CAGCccUAGCCGg -5'
25914 5' -55.3 NC_005337.1 + 80221 0.88 0.07976
Target:  5'- gAGCGCGCGcACgcgGUCGGGGUCGGCg -3'
miRNA:   3'- -UCGCGUGCuUGaa-CAGCCCUAGCCGg -5'
25914 5' -55.3 NC_005337.1 + 95570 0.81 0.208654
Target:  5'- uGGCgaGCACGGACgggcaGUcCGGGGUCGGCCg -3'
miRNA:   3'- -UCG--CGUGCUUGaa---CA-GCCCUAGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 37097 0.76 0.409473
Target:  5'- cAGCGUGCGGAagUUGUCGGGG--GGCCu -3'
miRNA:   3'- -UCGCGUGCUUg-AACAGCCCUagCCGG- -5'
25914 5' -55.3 NC_005337.1 + 121989 0.75 0.436087
Target:  5'- cGUGCGCGAGCUccUGcgcgCGGGGUgcgaccCGGCCg -3'
miRNA:   3'- uCGCGUGCUUGA--ACa---GCCCUA------GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 19156 0.75 0.436087
Target:  5'- uGUGCACGcACaUGUCGGcGA-CGGCCa -3'
miRNA:   3'- uCGCGUGCuUGaACAGCC-CUaGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 28947 0.75 0.463672
Target:  5'- aGGCGCAgGAGgUUGUUGGuGuucuugacgccGUCGGCCg -3'
miRNA:   3'- -UCGCGUgCUUgAACAGCC-C-----------UAGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 19309 0.73 0.551294
Target:  5'- uAGCGU-CGAACUUGUUGGGGaagUCugcgauGGCCa -3'
miRNA:   3'- -UCGCGuGCUUGAACAGCCCU---AG------CCGG- -5'
25914 5' -55.3 NC_005337.1 + 35065 0.73 0.584758
Target:  5'- uGCGCGCGAagaagccGC-UGUCGGGGcccuggcgcugcaugUCGGUCu -3'
miRNA:   3'- uCGCGUGCU-------UGaACAGCCCU---------------AGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.