miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25924 5' -58.8 NC_005337.1 + 104920 1.06 0.002003
Target:  5'- uCUCGCCGGUGCUCACGCGCAUGGACUc -3'
miRNA:   3'- -GAGCGGCCACGAGUGCGCGUACCUGA- -5'
25924 5' -58.8 NC_005337.1 + 72461 0.79 0.152608
Target:  5'- gCUCGCCGccGC-CAUGCGCGUGGACg -3'
miRNA:   3'- -GAGCGGCcaCGaGUGCGCGUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 69435 0.76 0.243976
Target:  5'- gCUCGuCCGGcgccaGCUCGCGCGCGcacaUGGGCa -3'
miRNA:   3'- -GAGC-GGCCa----CGAGUGCGCGU----ACCUGa -5'
25924 5' -58.8 NC_005337.1 + 123619 0.76 0.249867
Target:  5'- gCUCGCgGGUGCUgACGCuCGUGGAg- -3'
miRNA:   3'- -GAGCGgCCACGAgUGCGcGUACCUga -5'
25924 5' -58.8 NC_005337.1 + 24281 0.75 0.301276
Target:  5'- gCUgGCCGGcGCUCACGCaggGCGUGGuGCUc -3'
miRNA:   3'- -GAgCGGCCaCGAGUGCG---CGUACC-UGA- -5'
25924 5' -58.8 NC_005337.1 + 115798 0.74 0.329896
Target:  5'- -aCGCCGGUGCUggaCAUgGCGCGcGGACUc -3'
miRNA:   3'- gaGCGGCCACGA---GUG-CGCGUaCCUGA- -5'
25924 5' -58.8 NC_005337.1 + 81481 0.73 0.352645
Target:  5'- -cCGCCGuggugggcuccGUGUUCACGCGguUGGACc -3'
miRNA:   3'- gaGCGGC-----------CACGAGUGCGCguACCUGa -5'
25924 5' -58.8 NC_005337.1 + 5483 0.73 0.368417
Target:  5'- -cCGCuCGGUGCgCACGCcCGUGGACc -3'
miRNA:   3'- gaGCG-GCCACGaGUGCGcGUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 85004 0.73 0.368417
Target:  5'- uUCGCCGaUGCcguUCACGCGCucgaGGACUa -3'
miRNA:   3'- gAGCGGCcACG---AGUGCGCGua--CCUGA- -5'
25924 5' -58.8 NC_005337.1 + 49263 0.73 0.376483
Target:  5'- gCUCGCUGGUGgaCAuCGUGCA-GGGCg -3'
miRNA:   3'- -GAGCGGCCACgaGU-GCGCGUaCCUGa -5'
25924 5' -58.8 NC_005337.1 + 121793 0.72 0.392968
Target:  5'- -aCGCCGGUGCggACGCGgAggcgcUGGACg -3'
miRNA:   3'- gaGCGGCCACGagUGCGCgU-----ACCUGa -5'
25924 5' -58.8 NC_005337.1 + 95300 0.72 0.409914
Target:  5'- --gGCCGGUGacgCACGCGCAcucGGGCg -3'
miRNA:   3'- gagCGGCCACga-GUGCGCGUa--CCUGa -5'
25924 5' -58.8 NC_005337.1 + 88068 0.72 0.409914
Target:  5'- gCUCGUCGGcgaGCUCAUGCaggcCGUGGACa -3'
miRNA:   3'- -GAGCGGCCa--CGAGUGCGc---GUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 92940 0.72 0.427308
Target:  5'- -aCGCCGuucuacagcGUGCUgGUGCGCGUGGACg -3'
miRNA:   3'- gaGCGGC---------CACGAgUGCGCGUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 127373 0.72 0.436167
Target:  5'- -gCGCCGGcGCggacccgcgcgCGCGCGaCAUGGACg -3'
miRNA:   3'- gaGCGGCCaCGa----------GUGCGC-GUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 69893 0.72 0.436167
Target:  5'- -cCGCCGcuccgacaacGUGCUCcuGCGCGCGcUGGACa -3'
miRNA:   3'- gaGCGGC----------CACGAG--UGCGCGU-ACCUGa -5'
25924 5' -58.8 NC_005337.1 + 100547 0.71 0.448746
Target:  5'- -gCGCCGGcgGUUCAUGCGCAgcccucagauuuccaUGGGCc -3'
miRNA:   3'- gaGCGGCCa-CGAGUGCGCGU---------------ACCUGa -5'
25924 5' -58.8 NC_005337.1 + 25280 0.71 0.472626
Target:  5'- -gCGCUGGaGUUCGCGCGCAcggcGGGCg -3'
miRNA:   3'- gaGCGGCCaCGAGUGCGCGUa---CCUGa -5'
25924 5' -58.8 NC_005337.1 + 6393 0.71 0.472626
Target:  5'- gCUCGCCGGcGC-CGCGCGCcaccaGACUg -3'
miRNA:   3'- -GAGCGGCCaCGaGUGCGCGuac--CUGA- -5'
25924 5' -58.8 NC_005337.1 + 97452 0.71 0.48198
Target:  5'- uCUCGaaGGUGgUC-CGCGuCGUGGACg -3'
miRNA:   3'- -GAGCggCCACgAGuGCGC-GUACCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.