miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25924 5' -58.8 NC_005337.1 + 126050 0.68 0.664683
Target:  5'- -gCGCCGGUGCggACGCGacccuugccgaccUGGACg -3'
miRNA:   3'- gaGCGGCCACGagUGCGCgu-----------ACCUGa -5'
25924 5' -58.8 NC_005337.1 + 123842 0.69 0.559638
Target:  5'- gUC-CCGGcGUUCgcgGCGUGCAUGGACg -3'
miRNA:   3'- gAGcGGCCaCGAG---UGCGCGUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 115477 0.69 0.579655
Target:  5'- aCUCGCacCGGUGCacgCACGgGgcCGUGGACg -3'
miRNA:   3'- -GAGCG--GCCACGa--GUGCgC--GUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 50124 0.69 0.599819
Target:  5'- gCUCGCUGGcGCgCAucUGCGCgGUGGACa -3'
miRNA:   3'- -GAGCGGCCaCGaGU--GCGCG-UACCUGa -5'
25924 5' -58.8 NC_005337.1 + 88423 0.68 0.620077
Target:  5'- uCUCGCUGG-GCUUcuuccuGCaGCGCcUGGACUu -3'
miRNA:   3'- -GAGCGGCCaCGAG------UG-CGCGuACCUGA- -5'
25924 5' -58.8 NC_005337.1 + 91220 0.68 0.620077
Target:  5'- -cCGCCGGUGgUCAgCGCGUccauGUGGuCg -3'
miRNA:   3'- gaGCGGCCACgAGU-GCGCG----UACCuGa -5'
25924 5' -58.8 NC_005337.1 + 21655 0.68 0.650511
Target:  5'- uCUCGCUGGggcacgUGCUCGCGCuGCAcuaccUGGuCa -3'
miRNA:   3'- -GAGCGGCC------ACGAGUGCG-CGU-----ACCuGa -5'
25924 5' -58.8 NC_005337.1 + 86954 0.68 0.657602
Target:  5'- -aCGCCGuUGCuguugacgaagaccUCGCGCGCGUcGGACc -3'
miRNA:   3'- gaGCGGCcACG--------------AGUGCGCGUA-CCUGa -5'
25924 5' -58.8 NC_005337.1 + 122085 0.68 0.660638
Target:  5'- -gCGCuCGGUGCUCGaccagcucguCGCGCAcggcgcGGACa -3'
miRNA:   3'- gaGCG-GCCACGAGU----------GCGCGUa-----CCUGa -5'
25924 5' -58.8 NC_005337.1 + 127957 0.7 0.539818
Target:  5'- gUCGCUGGccgcGCUCAUGCGCuccaagaGGGCg -3'
miRNA:   3'- gAGCGGCCa---CGAGUGCGCGua-----CCUGa -5'
25924 5' -58.8 NC_005337.1 + 55404 0.7 0.520242
Target:  5'- -gCGCCuGcGUcaGCUCACGCGCAUcaaGGACg -3'
miRNA:   3'- gaGCGG-C-CA--CGAGUGCGCGUA---CCUGa -5'
25924 5' -58.8 NC_005337.1 + 25365 0.7 0.520242
Target:  5'- uCUCGCUGGUgcccuuGCUCACGCGCuc--GCUg -3'
miRNA:   3'- -GAGCGGCCA------CGAGUGCGCGuaccUGA- -5'
25924 5' -58.8 NC_005337.1 + 123619 0.76 0.249867
Target:  5'- gCUCGCgGGUGCUgACGCuCGUGGAg- -3'
miRNA:   3'- -GAGCGgCCACGAgUGCGcGUACCUga -5'
25924 5' -58.8 NC_005337.1 + 5483 0.73 0.368417
Target:  5'- -cCGCuCGGUGCgCACGCcCGUGGACc -3'
miRNA:   3'- gaGCG-GCCACGaGUGCGcGUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 121793 0.72 0.392968
Target:  5'- -aCGCCGGUGCggACGCGgAggcgcUGGACg -3'
miRNA:   3'- gaGCGGCCACGagUGCGCgU-----ACCUGa -5'
25924 5' -58.8 NC_005337.1 + 95300 0.72 0.409914
Target:  5'- --gGCCGGUGacgCACGCGCAcucGGGCg -3'
miRNA:   3'- gagCGGCCACga-GUGCGCGUa--CCUGa -5'
25924 5' -58.8 NC_005337.1 + 69893 0.72 0.436167
Target:  5'- -cCGCCGcuccgacaacGUGCUCcuGCGCGCGcUGGACa -3'
miRNA:   3'- gaGCGGC----------CACGAG--UGCGCGU-ACCUGa -5'
25924 5' -58.8 NC_005337.1 + 6393 0.71 0.472626
Target:  5'- gCUCGCCGGcGC-CGCGCGCcaccaGACUg -3'
miRNA:   3'- -GAGCGGCCaCGaGUGCGCGuac--CUGA- -5'
25924 5' -58.8 NC_005337.1 + 97452 0.71 0.48198
Target:  5'- uCUCGaaGGUGgUC-CGCGuCGUGGACg -3'
miRNA:   3'- -GAGCggCCACgAGuGCGC-GUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 130151 0.7 0.50095
Target:  5'- -gCGCUGGcGCUCGCGCGCuuucGGAg- -3'
miRNA:   3'- gaGCGGCCaCGAGUGCGCGua--CCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.