miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25924 5' -58.8 NC_005337.1 + 2928 0.66 0.759246
Target:  5'- gUCGCCGGagUGCcgACGCGCAcGGcGCg -3'
miRNA:   3'- gAGCGGCC--ACGagUGCGCGUaCC-UGa -5'
25924 5' -58.8 NC_005337.1 + 5483 0.73 0.368417
Target:  5'- -cCGCuCGGUGCgCACGCcCGUGGACc -3'
miRNA:   3'- gaGCG-GCCACGaGUGCGcGUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 6393 0.71 0.472626
Target:  5'- gCUCGCCGGcGC-CGCGCGCcaccaGACUg -3'
miRNA:   3'- -GAGCGGCCaCGaGUGCGCGuac--CUGA- -5'
25924 5' -58.8 NC_005337.1 + 8143 0.67 0.710765
Target:  5'- -aCGCCGGgcaugGC-CGCGCGCAcGG-Cg -3'
miRNA:   3'- gaGCGGCCa----CGaGUGCGCGUaCCuGa -5'
25924 5' -58.8 NC_005337.1 + 14849 0.66 0.740122
Target:  5'- -cCGCCgagcGGUGCUgGCGCGac-GGGCg -3'
miRNA:   3'- gaGCGG----CCACGAgUGCGCguaCCUGa -5'
25924 5' -58.8 NC_005337.1 + 21655 0.68 0.650511
Target:  5'- uCUCGCUGGggcacgUGCUCGCGCuGCAcuaccUGGuCa -3'
miRNA:   3'- -GAGCGGCC------ACGAGUGCG-CGU-----ACCuGa -5'
25924 5' -58.8 NC_005337.1 + 24281 0.75 0.301276
Target:  5'- gCUgGCCGGcGCUCACGCaggGCGUGGuGCUc -3'
miRNA:   3'- -GAgCGGCCaCGAGUGCG---CGUACC-UGA- -5'
25924 5' -58.8 NC_005337.1 + 24831 0.7 0.5497
Target:  5'- cCUCGCC-GUGCUCGagcgGCGCGUgcucgaGGACg -3'
miRNA:   3'- -GAGCGGcCACGAGUg---CGCGUA------CCUGa -5'
25924 5' -58.8 NC_005337.1 + 24984 0.7 0.510558
Target:  5'- uUCuUCGGcUGCaaCGCGCGCAUGGACa -3'
miRNA:   3'- gAGcGGCC-ACGa-GUGCGCGUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 25280 0.71 0.472626
Target:  5'- -gCGCUGGaGUUCGCGCGCAcggcGGGCg -3'
miRNA:   3'- gaGCGGCCaCGAGUGCGCGUa---CCUGa -5'
25924 5' -58.8 NC_005337.1 + 25365 0.7 0.520242
Target:  5'- uCUCGCUGGUgcccuuGCUCACGCGCuc--GCUg -3'
miRNA:   3'- -GAGCGGCCA------CGAGUGCGCGuaccUGA- -5'
25924 5' -58.8 NC_005337.1 + 25441 0.68 0.657602
Target:  5'- gUCGcCCGcgcgcuucggcaccGUGgaCGCGUGCGUGGACg -3'
miRNA:   3'- gAGC-GGC--------------CACgaGUGCGCGUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 25679 0.7 0.5497
Target:  5'- -cCGCCGGUGCUCccuccaGCGaaaGUGUGGAg- -3'
miRNA:   3'- gaGCGGCCACGAG------UGCg--CGUACCUga -5'
25924 5' -58.8 NC_005337.1 + 26399 0.66 0.781604
Target:  5'- gUCGuuGGUGUUCGgCGUgccgauguacuggugGCGUGGAUc -3'
miRNA:   3'- gAGCggCCACGAGU-GCG---------------CGUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 28250 0.67 0.680816
Target:  5'- gUCGCgCGGcaccacGCgCACGUGCGUGGugUc -3'
miRNA:   3'- gAGCG-GCCa-----CGaGUGCGCGUACCugA- -5'
25924 5' -58.8 NC_005337.1 + 28299 0.66 0.749735
Target:  5'- -aCGCCGGUGaccuccucgUCGCGCGCGUcguccaGGAa- -3'
miRNA:   3'- gaGCGGCCACg--------AGUGCGCGUA------CCUga -5'
25924 5' -58.8 NC_005337.1 + 29838 0.7 0.5497
Target:  5'- uCUCGuuGGUGCUCGgGaaGCAgaugGGGCg -3'
miRNA:   3'- -GAGCggCCACGAGUgCg-CGUa---CCUGa -5'
25924 5' -58.8 NC_005337.1 + 32570 0.69 0.569624
Target:  5'- --aGCCGGUGCUugaugaagUugGCGUA-GGACUc -3'
miRNA:   3'- gagCGGCCACGA--------GugCGCGUaCCUGA- -5'
25924 5' -58.8 NC_005337.1 + 38336 0.66 0.759246
Target:  5'- -gCGCCGGgcgaguacgcgcUGCgcaUCACGCacacgacggGCGUGGACa -3'
miRNA:   3'- gaGCGGCC------------ACG---AGUGCG---------CGUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 38768 0.71 0.485746
Target:  5'- --aGCCGGUGCgcgguggagcccgaCGCGCccgaguGCAUGGACUg -3'
miRNA:   3'- gagCGGCCACGa-------------GUGCG------CGUACCUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.