miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25942 3' -56.2 NC_005337.1 + 88238 0.66 0.895256
Target:  5'- gCUGCUgcgaaGACGUcGUGCG-UGCCGgCGc -3'
miRNA:   3'- -GAUGAag---CUGCA-CACGCcACGGCgGU- -5'
25942 3' -56.2 NC_005337.1 + 58040 0.66 0.895256
Target:  5'- gCU-CUUCGACGgcgGC-GUGCuCGCCAa -3'
miRNA:   3'- -GAuGAAGCUGCacaCGcCACG-GCGGU- -5'
25942 3' -56.2 NC_005337.1 + 84397 0.66 0.894594
Target:  5'- gCUGCUacaUgGACaucGUGCGGcugcugaUGCCGCCGg -3'
miRNA:   3'- -GAUGA---AgCUGca-CACGCC-------ACGGCGGU- -5'
25942 3' -56.2 NC_005337.1 + 108535 0.66 0.888529
Target:  5'- -gACggcgCGACG-GUGCGGggcGCgCGCCu -3'
miRNA:   3'- gaUGaa--GCUGCaCACGCCa--CG-GCGGu -5'
25942 3' -56.2 NC_005337.1 + 32210 0.66 0.888529
Target:  5'- -aGCUucUCGAUGgacUGCuuguugaugaaGGUGCCGCCGa -3'
miRNA:   3'- gaUGA--AGCUGCac-ACG-----------CCACGGCGGU- -5'
25942 3' -56.2 NC_005337.1 + 57368 0.66 0.888529
Target:  5'- -aACUUCGAguuCGUGUGCcucGGcgagcUGCUGCCc -3'
miRNA:   3'- gaUGAAGCU---GCACACG---CC-----ACGGCGGu -5'
25942 3' -56.2 NC_005337.1 + 73454 0.66 0.888529
Target:  5'- --uCUUCG-CGcG-GCGGUGCCGCg- -3'
miRNA:   3'- gauGAAGCuGCaCaCGCCACGGCGgu -5'
25942 3' -56.2 NC_005337.1 + 130748 0.66 0.888529
Target:  5'- -cGCUgggucCGACGUGUGCaccGUGgacgcCCGCCAc -3'
miRNA:   3'- gaUGAa----GCUGCACACGc--CAC-----GGCGGU- -5'
25942 3' -56.2 NC_005337.1 + 118761 0.66 0.887844
Target:  5'- gCUGCUgcgCGACGUccuagaugacgccGgcgGCGGcGCCGUCGu -3'
miRNA:   3'- -GAUGAa--GCUGCA-------------Ca--CGCCaCGGCGGU- -5'
25942 3' -56.2 NC_005337.1 + 91647 0.66 0.881573
Target:  5'- -aGCcgUCGACcaccGCGGUGCCGCaCAu -3'
miRNA:   3'- gaUGa-AGCUGcacaCGCCACGGCG-GU- -5'
25942 3' -56.2 NC_005337.1 + 92672 0.66 0.878728
Target:  5'- aCUGCUUCGACGUGcucaccuuccuggGCGGcGgCGaCCu -3'
miRNA:   3'- -GAUGAAGCUGCACa------------CGCCaCgGC-GGu -5'
25942 3' -56.2 NC_005337.1 + 62936 0.66 0.864734
Target:  5'- gUAC-UCGAUGuUGUGCaccgccgccgcgcgGGUcGCCGCCGa -3'
miRNA:   3'- gAUGaAGCUGC-ACACG--------------CCA-CGGCGGU- -5'
25942 3' -56.2 NC_005337.1 + 108128 0.66 0.859383
Target:  5'- -cGCUggUCGGCGUG-GUGGUGuCCGaCAa -3'
miRNA:   3'- gaUGA--AGCUGCACaCGCCAC-GGCgGU- -5'
25942 3' -56.2 NC_005337.1 + 69099 0.66 0.859383
Target:  5'- uCUACcUCGugGUGcaccucgucUGCGGgcgaGCCGCg- -3'
miRNA:   3'- -GAUGaAGCugCAC---------ACGCCa---CGGCGgu -5'
25942 3' -56.2 NC_005337.1 + 24052 0.66 0.859383
Target:  5'- gUGCUcgggCGACGcGgccGCGGccgcgGCCGCCAu -3'
miRNA:   3'- gAUGAa---GCUGCaCa--CGCCa----CGGCGGU- -5'
25942 3' -56.2 NC_005337.1 + 59337 0.66 0.859383
Target:  5'- gUACUUCGAgGacgaccacugGUGCGcG-GCCGCCu -3'
miRNA:   3'- gAUGAAGCUgCa---------CACGC-CaCGGCGGu -5'
25942 3' -56.2 NC_005337.1 + 18636 0.67 0.843542
Target:  5'- -cACUccUCGGCGaUG-GCGGccgcGCCGCCGc -3'
miRNA:   3'- gaUGA--AGCUGC-ACaCGCCa---CGGCGGU- -5'
25942 3' -56.2 NC_005337.1 + 55207 0.67 0.843542
Target:  5'- -aGCUUCGugGUG-GCGc-GCCGCa- -3'
miRNA:   3'- gaUGAAGCugCACaCGCcaCGGCGgu -5'
25942 3' -56.2 NC_005337.1 + 128500 0.67 0.818344
Target:  5'- gUGCgucgCGuACGUGgucgcGCGGcUGCCGCCc -3'
miRNA:   3'- gAUGaa--GC-UGCACa----CGCC-ACGGCGGu -5'
25942 3' -56.2 NC_005337.1 + 94020 0.68 0.782393
Target:  5'- cCUACUgucUCGugGUGgcgcggcGCGGcGCgGCCGa -3'
miRNA:   3'- -GAUGA---AGCugCACa------CGCCaCGgCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.