miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25951 3' -53.2 NC_005337.1 + 123080 1.13 0.002705
Target:  5'- cCGCGUGCACCGCACGAUGUACUUCGCg -3'
miRNA:   3'- -GCGCACGUGGCGUGCUACAUGAAGCG- -5'
25951 3' -53.2 NC_005337.1 + 11149 0.83 0.234977
Target:  5'- cCGCGacggGCGCCGCACGAcGUGCU-CGCc -3'
miRNA:   3'- -GCGCa---CGUGGCGUGCUaCAUGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 18804 0.78 0.44708
Target:  5'- uGCGUGCACCgGUGCGA-GUACgccagCGCg -3'
miRNA:   3'- gCGCACGUGG-CGUGCUaCAUGaa---GCG- -5'
25951 3' -53.2 NC_005337.1 + 32263 0.77 0.465871
Target:  5'- aCGCccgcGCGCUGCACGAUGUACUcgggCGUg -3'
miRNA:   3'- -GCGca--CGUGGCGUGCUACAUGAa---GCG- -5'
25951 3' -53.2 NC_005337.1 + 30232 0.76 0.514534
Target:  5'- aGCGUGCGcgaggagacguuCCGCGCGAUG-GCgUCGCc -3'
miRNA:   3'- gCGCACGU------------GGCGUGCUACaUGaAGCG- -5'
25951 3' -53.2 NC_005337.1 + 97772 0.76 0.544707
Target:  5'- aCGCGcGCGCUGCGCGAgaaGgaccGCUUCGUg -3'
miRNA:   3'- -GCGCaCGUGGCGUGCUa--Ca---UGAAGCG- -5'
25951 3' -53.2 NC_005337.1 + 54933 0.75 0.554894
Target:  5'- uGCGUGCACCucGCucuCGGUGUACacgaagcccguaUUCGCc -3'
miRNA:   3'- gCGCACGUGG--CGu--GCUACAUG------------AAGCG- -5'
25951 3' -53.2 NC_005337.1 + 70852 0.75 0.585763
Target:  5'- aCGCGgaaACCGCGCGcUGUACgagCGCg -3'
miRNA:   3'- -GCGCacgUGGCGUGCuACAUGaa-GCG- -5'
25951 3' -53.2 NC_005337.1 + 120865 0.75 0.596132
Target:  5'- gGCGUGU-CCGC-CGGUGUGCUacauUUGCa -3'
miRNA:   3'- gCGCACGuGGCGuGCUACAUGA----AGCG- -5'
25951 3' -53.2 NC_005337.1 + 29810 0.74 0.606528
Target:  5'- cCGCGUGCuCCGCGuacUGuGUGUGCUgCGCg -3'
miRNA:   3'- -GCGCACGuGGCGU---GC-UACAUGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 125362 0.74 0.616944
Target:  5'- gGCGcUGCACaCGUAC-AUGUGCUUCGg -3'
miRNA:   3'- gCGC-ACGUG-GCGUGcUACAUGAAGCg -5'
25951 3' -53.2 NC_005337.1 + 109174 0.74 0.64823
Target:  5'- gCGCGccGCGCCGCGCGGgcgGaGCUcggcgUCGCg -3'
miRNA:   3'- -GCGCa-CGUGGCGUGCUa--CaUGA-----AGCG- -5'
25951 3' -53.2 NC_005337.1 + 58268 0.74 0.64823
Target:  5'- cCGCGUGUACCggcGCACGgcGgccacCUUCGCc -3'
miRNA:   3'- -GCGCACGUGG---CGUGCuaCau---GAAGCG- -5'
25951 3' -53.2 NC_005337.1 + 35403 0.73 0.689716
Target:  5'- cCGCGcGCGCgGCGCGGUaGUACUgcUCGa -3'
miRNA:   3'- -GCGCaCGUGgCGUGCUA-CAUGA--AGCg -5'
25951 3' -53.2 NC_005337.1 + 34789 0.73 0.699986
Target:  5'- cCGCGUaGCGCCGCACGGccacgaagACgcccUCGCg -3'
miRNA:   3'- -GCGCA-CGUGGCGUGCUaca-----UGa---AGCG- -5'
25951 3' -53.2 NC_005337.1 + 123375 0.73 0.710198
Target:  5'- aGCGUGCGCgaCGCgGCGAUcGUGCUUC-Ca -3'
miRNA:   3'- gCGCACGUG--GCG-UGCUA-CAUGAAGcG- -5'
25951 3' -53.2 NC_005337.1 + 132108 0.73 0.710198
Target:  5'- gCGCGUcgGCGCCGUGCGcgGcagGCUcCGCa -3'
miRNA:   3'- -GCGCA--CGUGGCGUGCuaCa--UGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 6075 0.72 0.717305
Target:  5'- aGCG-GCGCCaggaucgaguccuuGCACGAggUGUACgUCGCg -3'
miRNA:   3'- gCGCaCGUGG--------------CGUGCU--ACAUGaAGCG- -5'
25951 3' -53.2 NC_005337.1 + 95395 0.72 0.717305
Target:  5'- aCGCGcGCgaacuccgagcagaACCGCGCGuccAUGUGCUUgGCg -3'
miRNA:   3'- -GCGCaCG--------------UGGCGUGC---UACAUGAAgCG- -5'
25951 3' -53.2 NC_005337.1 + 91460 0.72 0.730404
Target:  5'- gGCGUcuggGCGa-GCACGAUcccGUGCUUCGCg -3'
miRNA:   3'- gCGCA----CGUggCGUGCUA---CAUGAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.