miRNA display CGI


Results 1 - 20 of 209 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25951 3' -53.2 NC_005337.1 + 749 0.69 0.896923
Target:  5'- gCGCG-GCGCC-CGCGGccucgacggcggccaUGUGCUgCGCg -3'
miRNA:   3'- -GCGCaCGUGGcGUGCU---------------ACAUGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 749 0.69 0.896923
Target:  5'- gCGCG-GCGCC-CGCGGccucgacggcggccaUGUGCUgCGCg -3'
miRNA:   3'- -GCGCaCGUGGcGUGCU---------------ACAUGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 1440 0.66 0.967861
Target:  5'- gCGCGgcgGCGCCgagguGCGCGAccacGUACgccaCGCa -3'
miRNA:   3'- -GCGCa--CGUGG-----CGUGCUa---CAUGaa--GCG- -5'
25951 3' -53.2 NC_005337.1 + 1513 0.67 0.935427
Target:  5'- gGCGcGCGCCaGCGCGuccgccACUUCGUg -3'
miRNA:   3'- gCGCaCGUGG-CGUGCuaca--UGAAGCG- -5'
25951 3' -53.2 NC_005337.1 + 1566 0.67 0.944968
Target:  5'- cCGCGcGCAUgGCGCGGcccagGUugUgCGCg -3'
miRNA:   3'- -GCGCaCGUGgCGUGCUa----CAugAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 2788 0.66 0.970887
Target:  5'- gCGCGgaccgGUGCCGCAUG-UGcACUagGCg -3'
miRNA:   3'- -GCGCa----CGUGGCGUGCuACaUGAagCG- -5'
25951 3' -53.2 NC_005337.1 + 3024 0.71 0.79783
Target:  5'- gCGCGUGCG-CGC-CGAUGUGCgcgaccaCGUa -3'
miRNA:   3'- -GCGCACGUgGCGuGCUACAUGaa-----GCG- -5'
25951 3' -53.2 NC_005337.1 + 4100 0.67 0.953535
Target:  5'- cCGCGUGCuCCGCGCGcacgGCcuccgaaagCGCg -3'
miRNA:   3'- -GCGCACGuGGCGUGCuacaUGaa-------GCG- -5'
25951 3' -53.2 NC_005337.1 + 5476 0.68 0.919259
Target:  5'- uGCG-GCACCGCuCGGUGcGCa-CGCc -3'
miRNA:   3'- gCGCaCGUGGCGuGCUACaUGaaGCG- -5'
25951 3' -53.2 NC_005337.1 + 5763 0.69 0.880302
Target:  5'- gGCGggcgGCAgCCGCGCGAccacGUACgcgaCGCa -3'
miRNA:   3'- gCGCa---CGU-GGCGUGCUa---CAUGaa--GCG- -5'
25951 3' -53.2 NC_005337.1 + 6075 0.72 0.717305
Target:  5'- aGCG-GCGCCaggaucgaguccuuGCACGAggUGUACgUCGCg -3'
miRNA:   3'- gCGCaCGUGG--------------CGUGCU--ACAUGaAGCG- -5'
25951 3' -53.2 NC_005337.1 + 6234 0.71 0.815837
Target:  5'- aGCGUGUccCCGCGCGA-GUcaGCgUCGCu -3'
miRNA:   3'- gCGCACGu-GGCGUGCUaCA--UGaAGCG- -5'
25951 3' -53.2 NC_005337.1 + 6389 0.67 0.953535
Target:  5'- aCGCGcucgccgGCGCCGCGCGccaccagacUGUGCa-CGCa -3'
miRNA:   3'- -GCGCa------CGUGGCGUGCu--------ACAUGaaGCG- -5'
25951 3' -53.2 NC_005337.1 + 6669 0.67 0.935427
Target:  5'- gGCGUGCACCcacaGCACGAcucgGCgaCGUc -3'
miRNA:   3'- gCGCACGUGG----CGUGCUaca-UGaaGCG- -5'
25951 3' -53.2 NC_005337.1 + 6881 0.67 0.952311
Target:  5'- aGCGUGCGCCcguccaugucgcgcGCGCGcgGguccGCgccggCGCg -3'
miRNA:   3'- gCGCACGUGG--------------CGUGCuaCa---UGaa---GCG- -5'
25951 3' -53.2 NC_005337.1 + 7062 0.67 0.953535
Target:  5'- gGCGggGUugCGCGCGuagacGUGCagCGCg -3'
miRNA:   3'- gCGCa-CGugGCGUGCua---CAUGaaGCG- -5'
25951 3' -53.2 NC_005337.1 + 8426 0.68 0.900865
Target:  5'- gGCGU-CAUCGUcaguAUGAUGUACUcCGCu -3'
miRNA:   3'- gCGCAcGUGGCG----UGCUACAUGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 10298 0.69 0.894248
Target:  5'- gCGCGcaucgGCGCCGUucGCGucuAUGUGCagCGCg -3'
miRNA:   3'- -GCGCa----CGUGGCG--UGC---UACAUGaaGCG- -5'
25951 3' -53.2 NC_005337.1 + 11149 0.83 0.234977
Target:  5'- cCGCGacggGCGCCGCACGAcGUGCU-CGCc -3'
miRNA:   3'- -GCGCa---CGUGGCGUGCUaCAUGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 11177 0.68 0.913373
Target:  5'- -cCGUGCcagaACUGCGCGAaGUACaUCGUg -3'
miRNA:   3'- gcGCACG----UGGCGUGCUaCAUGaAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.