miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25951 3' -53.2 NC_005337.1 + 100106 0.7 0.841527
Target:  5'- gCGCGUGCACCGCgACG-UG-AC--CGCc -3'
miRNA:   3'- -GCGCACGUGGCG-UGCuACaUGaaGCG- -5'
25951 3' -53.2 NC_005337.1 + 101228 0.72 0.750256
Target:  5'- uCGCGgagGCGuCCGCGCGc-GUGCU-CGCg -3'
miRNA:   3'- -GCGCa--CGU-GGCGUGCuaCAUGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 92725 0.71 0.769677
Target:  5'- gCGCGUGCGCCuGCugGAggaggagGUaaaagaGCUcCGCa -3'
miRNA:   3'- -GCGCACGUGG-CGugCUa------CA------UGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 56444 0.71 0.792304
Target:  5'- gCGCGUGgACgGCGCGGUGgccgagaccaaggucUACgggCGCg -3'
miRNA:   3'- -GCGCACgUGgCGUGCUAC---------------AUGaa-GCG- -5'
25951 3' -53.2 NC_005337.1 + 42751 0.71 0.79783
Target:  5'- aGCGUGCGgugcgggucCCGCGCGuucGUGUGC-UCGg -3'
miRNA:   3'- gCGCACGU---------GGCGUGC---UACAUGaAGCg -5'
25951 3' -53.2 NC_005337.1 + 3024 0.71 0.79783
Target:  5'- gCGCGUGCG-CGC-CGAUGUGCgcgaccaCGUa -3'
miRNA:   3'- -GCGCACGUgGCGuGCUACAUGaa-----GCG- -5'
25951 3' -53.2 NC_005337.1 + 45761 0.71 0.810505
Target:  5'- cCGCGUucGUACCGCGCGGcgcUGUccaugacggcagacaGCUUgGCg -3'
miRNA:   3'- -GCGCA--CGUGGCGUGCU---ACA---------------UGAAgCG- -5'
25951 3' -53.2 NC_005337.1 + 131663 0.71 0.815837
Target:  5'- cCGUGcGCGCCGCGCuGAacgacuucgACUUCGCg -3'
miRNA:   3'- -GCGCaCGUGGCGUG-CUaca------UGAAGCG- -5'
25951 3' -53.2 NC_005337.1 + 97088 0.7 0.833151
Target:  5'- uGCGUGCccaACCGCAUGcugGUGC--CGCa -3'
miRNA:   3'- gCGCACG---UGGCGUGCua-CAUGaaGCG- -5'
25951 3' -53.2 NC_005337.1 + 46028 0.72 0.740379
Target:  5'- gCGCGccgGCA-CGCACGAcGU-CUUCGCa -3'
miRNA:   3'- -GCGCa--CGUgGCGUGCUaCAuGAAGCG- -5'
25951 3' -53.2 NC_005337.1 + 45030 0.72 0.740379
Target:  5'- aGCGUGgacuGCCGCACGAU--GCUcCGCa -3'
miRNA:   3'- gCGCACg---UGGCGUGCUAcaUGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 91460 0.72 0.730404
Target:  5'- gGCGUcuggGCGa-GCACGAUcccGUGCUUCGCg -3'
miRNA:   3'- gCGCA----CGUggCGUGCUA---CAUGAAGCG- -5'
25951 3' -53.2 NC_005337.1 + 32263 0.77 0.465871
Target:  5'- aCGCccgcGCGCUGCACGAUGUACUcgggCGUg -3'
miRNA:   3'- -GCGca--CGUGGCGUGCUACAUGAa---GCG- -5'
25951 3' -53.2 NC_005337.1 + 97772 0.76 0.544707
Target:  5'- aCGCGcGCGCUGCGCGAgaaGgaccGCUUCGUg -3'
miRNA:   3'- -GCGCaCGUGGCGUGCUa--Ca---UGAAGCG- -5'
25951 3' -53.2 NC_005337.1 + 70852 0.75 0.585763
Target:  5'- aCGCGgaaACCGCGCGcUGUACgagCGCg -3'
miRNA:   3'- -GCGCacgUGGCGUGCuACAUGaa-GCG- -5'
25951 3' -53.2 NC_005337.1 + 29810 0.74 0.606528
Target:  5'- cCGCGUGCuCCGCGuacUGuGUGUGCUgCGCg -3'
miRNA:   3'- -GCGCACGuGGCGU---GC-UACAUGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 125362 0.74 0.616944
Target:  5'- gGCGcUGCACaCGUAC-AUGUGCUUCGg -3'
miRNA:   3'- gCGC-ACGUG-GCGUGcUACAUGAAGCg -5'
25951 3' -53.2 NC_005337.1 + 109174 0.74 0.64823
Target:  5'- gCGCGccGCGCCGCGCGGgcgGaGCUcggcgUCGCg -3'
miRNA:   3'- -GCGCa-CGUGGCGUGCUa--CaUGA-----AGCG- -5'
25951 3' -53.2 NC_005337.1 + 132108 0.73 0.710198
Target:  5'- gCGCGUcgGCGCCGUGCGcgGcagGCUcCGCa -3'
miRNA:   3'- -GCGCA--CGUGGCGUGCuaCa--UGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 95395 0.72 0.717305
Target:  5'- aCGCGcGCgaacuccgagcagaACCGCGCGuccAUGUGCUUgGCg -3'
miRNA:   3'- -GCGCaCG--------------UGGCGUGC---UACAUGAAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.