miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26019 5' -50.9 NC_005342.2 + 3059 0.71 0.701853
Target:  5'- gCGUCgGCGAucuucGCCUCGuu-CGACAGCGc -3'
miRNA:   3'- aGCAG-UGCU-----UGGAGCuguGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 39947 0.71 0.701853
Target:  5'- cUCGUCgGCGAGUCgaagaaaggCGACugGACGACGc -3'
miRNA:   3'- -AGCAG-UGCUUGGa--------GCUGugCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 22750 0.71 0.701853
Target:  5'- gCGUCGCGGGCgUCGACGuCGAgucGCGc -3'
miRNA:   3'- aGCAGUGCUUGgAGCUGU-GCUgu-UGC- -5'
26019 5' -50.9 NC_005342.2 + 17675 0.71 0.701853
Target:  5'- aUGUCGCGGugUUCGGCugGcaGACGa -3'
miRNA:   3'- aGCAGUGCUugGAGCUGugCugUUGC- -5'
26019 5' -50.9 NC_005342.2 + 35767 0.7 0.712853
Target:  5'- gUUGUCACGcuACCgucCGAUACGACGAg- -3'
miRNA:   3'- -AGCAGUGCu-UGGa--GCUGUGCUGUUgc -5'
26019 5' -50.9 NC_005342.2 + 18396 0.7 0.712853
Target:  5'- uUCGcCGCGAaugACCagUCGAC-CGGCGGCGc -3'
miRNA:   3'- -AGCaGUGCU---UGG--AGCUGuGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 3556 0.7 0.723769
Target:  5'- aUCGcCugGGcgGCCUCGACGuCGACAcCa -3'
miRNA:   3'- -AGCaGugCU--UGGAGCUGU-GCUGUuGc -5'
26019 5' -50.9 NC_005342.2 + 13214 0.7 0.723769
Target:  5'- gCGUCACGccgaugGugUUCGGCGCGAcCGGCa -3'
miRNA:   3'- aGCAGUGC------UugGAGCUGUGCU-GUUGc -5'
26019 5' -50.9 NC_005342.2 + 9797 0.7 0.73459
Target:  5'- gCGcCACGGAUCgacaaaguUCGACGCGGCAAgCGu -3'
miRNA:   3'- aGCaGUGCUUGG--------AGCUGUGCUGUU-GC- -5'
26019 5' -50.9 NC_005342.2 + 16057 0.7 0.73459
Target:  5'- gUCGUCcUGAACCUCGGCgaguaagcGCGugGcCGg -3'
miRNA:   3'- -AGCAGuGCUUGGAGCUG--------UGCugUuGC- -5'
26019 5' -50.9 NC_005342.2 + 30967 0.7 0.73459
Target:  5'- gCGUgCACGAG--UCGAgCGCGGCGACGg -3'
miRNA:   3'- aGCA-GUGCUUggAGCU-GUGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 21109 0.7 0.745304
Target:  5'- gUGUUugcCGAGCg-CGACGCGACAGCa -3'
miRNA:   3'- aGCAGu--GCUUGgaGCUGUGCUGUUGc -5'
26019 5' -50.9 NC_005342.2 + 47279 0.7 0.745304
Target:  5'- gCGcUCGCGGGCggCGGCACGAUcGCGc -3'
miRNA:   3'- aGC-AGUGCUUGgaGCUGUGCUGuUGC- -5'
26019 5' -50.9 NC_005342.2 + 35950 0.7 0.755898
Target:  5'- gCGUCGCGucauaguaGACCUCGccgagcCACGACAugcaGCGa -3'
miRNA:   3'- aGCAGUGC--------UUGGAGCu-----GUGCUGU----UGC- -5'
26019 5' -50.9 NC_005342.2 + 25377 0.7 0.755898
Target:  5'- ---aCACGAgcGCCgaugUCGugACGACGGCGg -3'
miRNA:   3'- agcaGUGCU--UGG----AGCugUGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 45508 0.69 0.776677
Target:  5'- aUCGUCACGAACa---ACGCGGCuuCGu -3'
miRNA:   3'- -AGCAGUGCUUGgagcUGUGCUGuuGC- -5'
26019 5' -50.9 NC_005342.2 + 27429 0.69 0.786838
Target:  5'- aUGUUACaGGCCgccagcgaaCGGCGCGGCGGCGg -3'
miRNA:   3'- aGCAGUGcUUGGa--------GCUGUGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 7454 0.69 0.790856
Target:  5'- aUCGUCACGAauuccaGCUUCGggaaaauauccuucaGCuucGCGGCGGCGg -3'
miRNA:   3'- -AGCAGUGCU------UGGAGC---------------UG---UGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 27390 0.69 0.806644
Target:  5'- aCGgCGCG-ACC-CGACGCGcCGACGa -3'
miRNA:   3'- aGCaGUGCuUGGaGCUGUGCuGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 8689 0.69 0.806644
Target:  5'- aUCGUCACGAaagucgacgucaACaUCGGCGCcGCAACc -3'
miRNA:   3'- -AGCAGUGCU------------UGgAGCUGUGcUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.