miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26019 5' -50.9 NC_005342.2 + 47867 1.11 0.002216
Target:  5'- gUCGUCACGAACCUCGACACGACAACGg -3'
miRNA:   3'- -AGCAGUGCUUGGAGCUGUGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 45479 0.8 0.249769
Target:  5'- aCGUCGCGcccGACCUCGAgGCGGCGuCGa -3'
miRNA:   3'- aGCAGUGC---UUGGAGCUgUGCUGUuGC- -5'
26019 5' -50.9 NC_005342.2 + 6738 0.77 0.35401
Target:  5'- -gGUCGCGcGCCUCGAgguagccgaucgcaUACGACAGCGc -3'
miRNA:   3'- agCAGUGCuUGGAGCU--------------GUGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 11877 0.77 0.374262
Target:  5'- gUCGUCGCG-GCC-CGGCAUGcGCAGCGg -3'
miRNA:   3'- -AGCAGUGCuUGGaGCUGUGC-UGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 45214 0.75 0.440533
Target:  5'- gUCGUgACGAACgCgacCGGCACGGCGGCc -3'
miRNA:   3'- -AGCAgUGCUUG-Ga--GCUGUGCUGUUGc -5'
26019 5' -50.9 NC_005342.2 + 89 0.75 0.460661
Target:  5'- gUCGUguCGAGgUUCGugACGACGAUGa -3'
miRNA:   3'- -AGCAguGCUUgGAGCugUGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 23737 0.74 0.502308
Target:  5'- gUCGUaACGGGCagCUCGACACG-CGACGa -3'
miRNA:   3'- -AGCAgUGCUUG--GAGCUGUGCuGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 21319 0.73 0.556516
Target:  5'- aCGcUCACGAGCggCGGUGCGACAACGa -3'
miRNA:   3'- aGC-AGUGCUUGgaGCUGUGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 25292 0.73 0.567577
Target:  5'- gCGUCGC-AACCgggcCGACGcCGGCGACGg -3'
miRNA:   3'- aGCAGUGcUUGGa---GCUGU-GCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 38645 0.73 0.578692
Target:  5'- aCGagACGAACCaCGACGCGAcCGGCa -3'
miRNA:   3'- aGCagUGCUUGGaGCUGUGCU-GUUGc -5'
26019 5' -50.9 NC_005342.2 + 43288 0.72 0.612279
Target:  5'- gUGUCGCGcgcucGCCUCGAaCGCGAguGCGc -3'
miRNA:   3'- aGCAGUGCu----UGGAGCU-GUGCUguUGC- -5'
26019 5' -50.9 NC_005342.2 + 33868 0.72 0.623524
Target:  5'- -gGUCACGGGCCaCGACgauaGCGuCGACGg -3'
miRNA:   3'- agCAGUGCUUGGaGCUG----UGCuGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 28229 0.72 0.623524
Target:  5'- gCGUCACGGugACCgUGACGCGcacGCGGCGc -3'
miRNA:   3'- aGCAGUGCU--UGGaGCUGUGC---UGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 9859 0.72 0.623524
Target:  5'- gCGUCACGccggcgcACC-CGACacGCGACAGCGc -3'
miRNA:   3'- aGCAGUGCu------UGGaGCUG--UGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 17320 0.72 0.623524
Target:  5'- aUCGUUgcgaugaagGCGAGCgUCGACGCGcuCGACGc -3'
miRNA:   3'- -AGCAG---------UGCUUGgAGCUGUGCu-GUUGC- -5'
26019 5' -50.9 NC_005342.2 + 46851 0.71 0.653895
Target:  5'- aCGUCGCGcgcagcacggcaccGACUUCGcGCGCGACuGCGa -3'
miRNA:   3'- aGCAGUGC--------------UUGGAGC-UGUGCUGuUGC- -5'
26019 5' -50.9 NC_005342.2 + 14510 0.71 0.657263
Target:  5'- aCGcgCACGAACUguuUCGGCAguuCGGCAACGc -3'
miRNA:   3'- aGCa-GUGCUUGG---AGCUGU---GCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 33105 0.71 0.668476
Target:  5'- gCGUagaACGGcgauGCCUgCGGCGCGGCGACu -3'
miRNA:   3'- aGCAg--UGCU----UGGA-GCUGUGCUGUUGc -5'
26019 5' -50.9 NC_005342.2 + 27621 0.71 0.679653
Target:  5'- -gGUCGCGGuACCcgUCGGCACGGcCGGCa -3'
miRNA:   3'- agCAGUGCU-UGG--AGCUGUGCU-GUUGc -5'
26019 5' -50.9 NC_005342.2 + 25562 0.71 0.690782
Target:  5'- gCGcCGCGaAGCCUCGACcUGGCAgACGg -3'
miRNA:   3'- aGCaGUGC-UUGGAGCUGuGCUGU-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.