Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26019 | 5' | -50.9 | NC_005342.2 | + | 41206 | 0.66 | 0.931489 |
Target: 5'- gUCGUaUGCGAucggcuACCUCGAgGCGcGCGACc -3' miRNA: 3'- -AGCA-GUGCU------UGGAGCUgUGC-UGUUGc -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 18245 | 0.66 | 0.906707 |
Target: 5'- aCGUCGCaugGGGCUcgcauUCGGCgcugGCGGCAGCGc -3' miRNA: 3'- aGCAGUG---CUUGG-----AGCUG----UGCUGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 14234 | 0.66 | 0.906707 |
Target: 5'- -aGUCGCGAuCCaaaacaacacaaUCGGCACGuGCGACc -3' miRNA: 3'- agCAGUGCUuGG------------AGCUGUGC-UGUUGc -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 6179 | 0.66 | 0.906707 |
Target: 5'- cUCGUCGUGAAUCUCG-UACGAgucgcuuuCGGCGa -3' miRNA: 3'- -AGCAGUGCUUGGAGCuGUGCU--------GUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 38861 | 0.66 | 0.906707 |
Target: 5'- gCGUUACGug-CUCGGCGgCGACAuuGCGc -3' miRNA: 3'- aGCAGUGCuugGAGCUGU-GCUGU--UGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 43885 | 0.66 | 0.899797 |
Target: 5'- cUGUCGCGccCgCUCGGCAagGGCGGCGc -3' miRNA: 3'- aGCAGUGCuuG-GAGCUGUg-CUGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 10691 | 0.66 | 0.899797 |
Target: 5'- gCGUCgGCGAGCUgacGCACGAgCAGCGc -3' miRNA: 3'- aGCAG-UGCUUGGagcUGUGCU-GUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 8400 | 0.66 | 0.899797 |
Target: 5'- uUCGUCuuGAAcacuuCCUgGAuCACGGCAGCc -3' miRNA: 3'- -AGCAGugCUU-----GGAgCU-GUGCUGUUGc -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 22854 | 0.66 | 0.902595 |
Target: 5'- uUUGUCGCGGcCCggcgaUCGGCGCGAUcguacuggcgcucguGACGa -3' miRNA: 3'- -AGCAGUGCUuGG-----AGCUGUGCUG---------------UUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 12169 | 0.66 | 0.909392 |
Target: 5'- gCGUCACGGGCCagcUCGucguaucggacgguaGCGUGACAACc -3' miRNA: 3'- aGCAGUGCUUGG---AGC---------------UGUGCUGUUGc -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 19729 | 0.66 | 0.911376 |
Target: 5'- gCGUCACGGucACCgUGACGCGcccggacgcgcaagGCAACc -3' miRNA: 3'- aGCAGUGCU--UGGaGCUGUGC--------------UGUUGc -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 36431 | 0.66 | 0.912684 |
Target: 5'- gCGUCugcgcaacGCGGGCUUCGACAucaagcuCGACAugACGc -3' miRNA: 3'- aGCAG--------UGCUUGGAGCUGU-------GCUGU--UGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 39404 | 0.66 | 0.931489 |
Target: 5'- aUCGUCGCGuAUCU-GGCugaauuCGGCAACa -3' miRNA: 3'- -AGCAGUGCuUGGAgCUGu-----GCUGUUGc -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 32171 | 0.66 | 0.931489 |
Target: 5'- aCGUgCGCaGGCgUCGGCGCGAUcgAACGc -3' miRNA: 3'- aGCA-GUGcUUGgAGCUGUGCUG--UUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 25142 | 0.66 | 0.925726 |
Target: 5'- aCGuUCACGAGCgaCaGCGCGACGAa- -3' miRNA: 3'- aGC-AGUGCUUGgaGcUGUGCUGUUgc -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 19300 | 0.66 | 0.925726 |
Target: 5'- ---aCGCGuGCCUCGGCGCGcCGcuGCGc -3' miRNA: 3'- agcaGUGCuUGGAGCUGUGCuGU--UGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 17380 | 0.66 | 0.919053 |
Target: 5'- aCGUC-CGAggagaaccgccagGCgCUCGACGCGuucuACGACGc -3' miRNA: 3'- aGCAGuGCU-------------UG-GAGCUGUGC----UGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 19641 | 0.66 | 0.919053 |
Target: 5'- aCGUCgcauccgaACGAGCCUCGAUucaugcuggauugACGAUAGa- -3' miRNA: 3'- aGCAG--------UGCUUGGAGCUG-------------UGCUGUUgc -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 12130 | 0.66 | 0.913334 |
Target: 5'- cCGUCGCcAACCUugcguacguggcUGGCGCG-CAGCGc -3' miRNA: 3'- aGCAGUGcUUGGA------------GCUGUGCuGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 15824 | 0.66 | 0.913334 |
Target: 5'- cUCGUCAgCGAGCUgcgcgaGGCGCGGgcCGACa -3' miRNA: 3'- -AGCAGU-GCUUGGag----CUGUGCU--GUUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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