Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26019 | 5' | -50.9 | NC_005342.2 | + | 6738 | 0.77 | 0.35401 |
Target: 5'- -gGUCGCGcGCCUCGAgguagccgaucgcaUACGACAGCGc -3' miRNA: 3'- agCAGUGCuUGGAGCU--------------GUGCUGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 2841 | 0.68 | 0.816266 |
Target: 5'- gCGuUUGCGAACgaCGuCGCGGCGGCGa -3' miRNA: 3'- aGC-AGUGCUUGgaGCuGUGCUGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 7676 | 0.68 | 0.834892 |
Target: 5'- gUCGUaGCGGugaUCGGCGCGgACAGCGa -3' miRNA: 3'- -AGCAgUGCUuggAGCUGUGC-UGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 43903 | 0.66 | 0.931489 |
Target: 5'- aCGUUcCGGcGCC-CGGCAUGGCGACc -3' miRNA: 3'- aGCAGuGCU-UGGaGCUGUGCUGUUGc -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 25292 | 0.73 | 0.567577 |
Target: 5'- gCGUCGC-AACCgggcCGACGcCGGCGACGg -3' miRNA: 3'- aGCAGUGcUUGGa---GCUGU-GCUGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 38645 | 0.73 | 0.578692 |
Target: 5'- aCGagACGAACCaCGACGCGAcCGGCa -3' miRNA: 3'- aGCagUGCUUGGaGCUGUGCU-GUUGc -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 28229 | 0.72 | 0.623524 |
Target: 5'- gCGUCACGGugACCgUGACGCGcacGCGGCGc -3' miRNA: 3'- aGCAGUGCU--UGGaGCUGUGC---UGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 14510 | 0.71 | 0.657263 |
Target: 5'- aCGcgCACGAACUguuUCGGCAguuCGGCAACGc -3' miRNA: 3'- aGCa-GUGCUUGG---AGCUGU---GCUGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 35767 | 0.7 | 0.712853 |
Target: 5'- gUUGUCACGcuACCgucCGAUACGACGAg- -3' miRNA: 3'- -AGCAGUGCu-UGGa--GCUGUGCUGUUgc -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 27401 | 0.69 | 0.806644 |
Target: 5'- cCGUCAUGuuuGCCguaacccuGCGCGGCGACGg -3' miRNA: 3'- aGCAGUGCu--UGGagc-----UGUGCUGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 7454 | 0.69 | 0.790856 |
Target: 5'- aUCGUCACGAauuccaGCUUCGggaaaauauccuucaGCuucGCGGCGGCGg -3' miRNA: 3'- -AGCAGUGCU------UGGAGC---------------UG---UGCUGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 3059 | 0.71 | 0.701853 |
Target: 5'- gCGUCgGCGAucuucGCCUCGuu-CGACAGCGc -3' miRNA: 3'- aGCAG-UGCU-----UGGAGCuguGCUGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 11877 | 0.77 | 0.374262 |
Target: 5'- gUCGUCGCG-GCC-CGGCAUGcGCAGCGg -3' miRNA: 3'- -AGCAGUGCuUGGaGCUGUGC-UGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 7633 | 0.69 | 0.806644 |
Target: 5'- uUCGuUCACGAccGCUUCGACugcCGGCGAa- -3' miRNA: 3'- -AGC-AGUGCU--UGGAGCUGu--GCUGUUgc -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 89 | 0.75 | 0.460661 |
Target: 5'- gUCGUguCGAGgUUCGugACGACGAUGa -3' miRNA: 3'- -AGCAguGCUUgGAGCugUGCUGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 33105 | 0.71 | 0.668476 |
Target: 5'- gCGUagaACGGcgauGCCUgCGGCGCGGCGACu -3' miRNA: 3'- aGCAg--UGCU----UGGA-GCUGUGCUGUUGc -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 1527 | 0.69 | 0.806644 |
Target: 5'- uUCGUugaaCACGAAgC-CGGC-CGACAGCGu -3' miRNA: 3'- -AGCA----GUGCUUgGaGCUGuGCUGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 41264 | 0.68 | 0.825685 |
Target: 5'- gCGUCGCGAugCUCacGAC-CGGCuucAACGc -3' miRNA: 3'- aGCAGUGCUugGAG--CUGuGCUG---UUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 23737 | 0.74 | 0.502308 |
Target: 5'- gUCGUaACGGGCagCUCGACACG-CGACGa -3' miRNA: 3'- -AGCAgUGCUUG--GAGCUGUGCuGUUGC- -5' |
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26019 | 5' | -50.9 | NC_005342.2 | + | 43288 | 0.72 | 0.612279 |
Target: 5'- gUGUCGCGcgcucGCCUCGAaCGCGAguGCGc -3' miRNA: 3'- aGCAGUGCu----UGGAGCU-GUGCUguUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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