miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26019 5' -50.9 NC_005342.2 + 89 0.75 0.460661
Target:  5'- gUCGUguCGAGgUUCGugACGACGAUGa -3'
miRNA:   3'- -AGCAguGCUUgGAGCugUGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 242 0.67 0.8774
Target:  5'- gUCGUCACGccGCCgagcaCGGuCACGGuCGACGu -3'
miRNA:   3'- -AGCAGUGCu-UGGa----GCU-GUGCU-GUUGC- -5'
26019 5' -50.9 NC_005342.2 + 1527 0.69 0.806644
Target:  5'- uUCGUugaaCACGAAgC-CGGC-CGACAGCGu -3'
miRNA:   3'- -AGCA----GUGCUUgGaGCUGuGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 2460 0.67 0.868583
Target:  5'- uUCGUgACGAucgacgccGCCUCGaggucggGCGCGACGuACa -3'
miRNA:   3'- -AGCAgUGCU--------UGGAGC-------UGUGCUGU-UGc -5'
26019 5' -50.9 NC_005342.2 + 2754 0.66 0.925726
Target:  5'- uUCGUCACG-ACCgUGAaGCGAUuGCGc -3'
miRNA:   3'- -AGCAGUGCuUGGaGCUgUGCUGuUGC- -5'
26019 5' -50.9 NC_005342.2 + 2841 0.68 0.816266
Target:  5'- gCGuUUGCGAACgaCGuCGCGGCGGCGa -3'
miRNA:   3'- aGC-AGUGCUUGgaGCuGUGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 3001 0.68 0.852628
Target:  5'- gCG-CGCGAACUUCaGAUcguACGGCAGCu -3'
miRNA:   3'- aGCaGUGCUUGGAG-CUG---UGCUGUUGc -5'
26019 5' -50.9 NC_005342.2 + 3059 0.71 0.701853
Target:  5'- gCGUCgGCGAucuucGCCUCGuu-CGACAGCGc -3'
miRNA:   3'- aGCAG-UGCU-----UGGAGCuguGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 3556 0.7 0.723769
Target:  5'- aUCGcCugGGcgGCCUCGACGuCGACAcCa -3'
miRNA:   3'- -AGCaGugCU--UGGAGCUGU-GCUGUuGc -5'
26019 5' -50.9 NC_005342.2 + 6143 0.67 0.861137
Target:  5'- --cUCGCGAcacGCCUCGuCGCG-CAGCa -3'
miRNA:   3'- agcAGUGCU---UGGAGCuGUGCuGUUGc -5'
26019 5' -50.9 NC_005342.2 + 6179 0.66 0.906707
Target:  5'- cUCGUCGUGAAUCUCG-UACGAgucgcuuuCGGCGa -3'
miRNA:   3'- -AGCAGUGCUUGGAGCuGUGCU--------GUUGC- -5'
26019 5' -50.9 NC_005342.2 + 6738 0.77 0.35401
Target:  5'- -gGUCGCGcGCCUCGAgguagccgaucgcaUACGACAGCGc -3'
miRNA:   3'- agCAGUGCuUGGAGCU--------------GUGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 7454 0.69 0.790856
Target:  5'- aUCGUCACGAauuccaGCUUCGggaaaauauccuucaGCuucGCGGCGGCGg -3'
miRNA:   3'- -AGCAGUGCU------UGGAGC---------------UG---UGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 7633 0.69 0.806644
Target:  5'- uUCGuUCACGAccGCUUCGACugcCGGCGAa- -3'
miRNA:   3'- -AGC-AGUGCU--UGGAGCUGu--GCUGUUgc -5'
26019 5' -50.9 NC_005342.2 + 7676 0.68 0.834892
Target:  5'- gUCGUaGCGGugaUCGGCGCGgACAGCGa -3'
miRNA:   3'- -AGCAgUGCUuggAGCUGUGC-UGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 8400 0.66 0.899797
Target:  5'- uUCGUCuuGAAcacuuCCUgGAuCACGGCAGCc -3'
miRNA:   3'- -AGCAGugCUU-----GGAgCU-GUGCUGUUGc -5'
26019 5' -50.9 NC_005342.2 + 8689 0.69 0.806644
Target:  5'- aUCGUCACGAaagucgacgucaACaUCGGCGCcGCAACc -3'
miRNA:   3'- -AGCAGUGCU------------UGgAGCUGUGcUGUUGc -5'
26019 5' -50.9 NC_005342.2 + 8936 0.68 0.834892
Target:  5'- gCGUgCGCGGGCUggaUCGugcggccguGCGCGGCGGCGa -3'
miRNA:   3'- aGCA-GUGCUUGG---AGC---------UGUGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 9541 0.66 0.919053
Target:  5'- aUCGUgGCGAguucguugccgccACCUucagcgccagcCGGCGCGGCAuCGg -3'
miRNA:   3'- -AGCAgUGCU-------------UGGA-----------GCUGUGCUGUuGC- -5'
26019 5' -50.9 NC_005342.2 + 9797 0.7 0.73459
Target:  5'- gCGcCACGGAUCgacaaaguUCGACGCGGCAAgCGu -3'
miRNA:   3'- aGCaGUGCUUGG--------AGCUGUGCUGUU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.