miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26021 3' -53.6 NC_005342.2 + 41381 0.66 0.807656
Target:  5'- aCGC--CGGCAAggagaauauccUCGugCUCGaCGCGGg -3'
miRNA:   3'- -GCGuuGCCGUU-----------AGUugGAGCgGUGCC- -5'
26021 3' -53.6 NC_005342.2 + 32400 0.66 0.797954
Target:  5'- aGCAGCGuGCGAccgugaUCGagcagcuuaaggAgCUCGCCACGa -3'
miRNA:   3'- gCGUUGC-CGUU------AGU------------UgGAGCGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 29479 0.66 0.797954
Target:  5'- gGCAGCGGCGGguacGCCUCcgguGCCG-GGu -3'
miRNA:   3'- gCGUUGCCGUUagu-UGGAG----CGGUgCC- -5'
26021 3' -53.6 NC_005342.2 + 39255 0.66 0.796974
Target:  5'- -cCAACGGCAAgaugaucgcggacUCGAgCggCGUCACGGu -3'
miRNA:   3'- gcGUUGCCGUU-------------AGUUgGa-GCGGUGCC- -5'
26021 3' -53.6 NC_005342.2 + 1893 0.66 0.788074
Target:  5'- cCGCAGCGGCGcaUAACggCGCC-CGc -3'
miRNA:   3'- -GCGUUGCCGUuaGUUGgaGCGGuGCc -5'
26021 3' -53.6 NC_005342.2 + 38366 0.66 0.788074
Target:  5'- gGCAGcCGGUGcgCAACCggccgaUGCCGCGc -3'
miRNA:   3'- gCGUU-GCCGUuaGUUGGa-----GCGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 22791 0.66 0.785078
Target:  5'- aCGCGGCGGCAggagagcguAUCGAUCggugguaucgggcagGCCGCGa -3'
miRNA:   3'- -GCGUUGCCGU---------UAGUUGGag-------------CGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 19026 0.66 0.778028
Target:  5'- gGCAACGGCugg-AACgaCGCCaugcGCGGg -3'
miRNA:   3'- gCGUUGCCGuuagUUGgaGCGG----UGCC- -5'
26021 3' -53.6 NC_005342.2 + 801 0.66 0.778028
Target:  5'- aCGUAGCuGCGGUCGccugcGCgUCGCUcggcGCGGg -3'
miRNA:   3'- -GCGUUGcCGUUAGU-----UGgAGCGG----UGCC- -5'
26021 3' -53.6 NC_005342.2 + 39197 0.66 0.797954
Target:  5'- gCGCAA-GGCAuugccggCGACUUCGCCAg-- -3'
miRNA:   3'- -GCGUUgCCGUua-----GUUGGAGCGGUgcc -5'
26021 3' -53.6 NC_005342.2 + 41737 0.66 0.797954
Target:  5'- gGUAugGGCGAagaaUCGACCcacuaauuUCGCgCACGc -3'
miRNA:   3'- gCGUugCCGUU----AGUUGG--------AGCG-GUGCc -5'
26021 3' -53.6 NC_005342.2 + 47288 0.66 0.797954
Target:  5'- gGCGGCGGCA--CGAUCgCGCUcaccgagcACGGg -3'
miRNA:   3'- gCGUUGCCGUuaGUUGGaGCGG--------UGCC- -5'
26021 3' -53.6 NC_005342.2 + 2255 0.66 0.807656
Target:  5'- gCGCcgagUGGCAGgccgggaCAccacGCCUCGCCGCGa -3'
miRNA:   3'- -GCGuu--GCCGUUa------GU----UGGAGCGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 29795 0.66 0.807656
Target:  5'- gGCAcgcCGGCAAUCGGCuucuugCUCGUgGCGu -3'
miRNA:   3'- gCGUu--GCCGUUAGUUG------GAGCGgUGCc -5'
26021 3' -53.6 NC_005342.2 + 36058 0.66 0.806694
Target:  5'- gCGUAAUGGCGcgCGcgccgcugcgcauGCCggGCCGCGa -3'
miRNA:   3'- -GCGUUGCCGUuaGU-------------UGGagCGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 39069 0.66 0.806694
Target:  5'- cCGCGuCGcGCAucgacgcCAACCUCGCCaagaucaaggugcGCGGc -3'
miRNA:   3'- -GCGUuGC-CGUua-----GUUGGAGCGG-------------UGCC- -5'
26021 3' -53.6 NC_005342.2 + 444 0.66 0.803797
Target:  5'- gCGCGGCgaugugcuuGGCAcaGUCGGCCgggguguacgagGCCACGGc -3'
miRNA:   3'- -GCGUUG---------CCGU--UAGUUGGag----------CGGUGCC- -5'
26021 3' -53.6 NC_005342.2 + 45642 0.66 0.801857
Target:  5'- gCGCAACGGCcgcacgGugCUCGCguuccgccaguucaaCGCGGg -3'
miRNA:   3'- -GCGUUGCCGuuag--UugGAGCG---------------GUGCC- -5'
26021 3' -53.6 NC_005342.2 + 21232 0.66 0.797954
Target:  5'- aCGCAAUGG--GUCAaguuccugGCCggCGCgGCGGg -3'
miRNA:   3'- -GCGUUGCCguUAGU--------UGGa-GCGgUGCC- -5'
26021 3' -53.6 NC_005342.2 + 3527 0.66 0.797954
Target:  5'- gCGCcuCGGCGaacgccuucaaGUCcuCCaUCGCCugGGc -3'
miRNA:   3'- -GCGuuGCCGU-----------UAGuuGG-AGCGGugCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.