miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26021 3' -53.6 NC_005342.2 + 444 0.66 0.803797
Target:  5'- gCGCGGCgaugugcuuGGCAcaGUCGGCCgggguguacgagGCCACGGc -3'
miRNA:   3'- -GCGUUG---------CCGU--UAGUUGGag----------CGGUGCC- -5'
26021 3' -53.6 NC_005342.2 + 801 0.66 0.778028
Target:  5'- aCGUAGCuGCGGUCGccugcGCgUCGCUcggcGCGGg -3'
miRNA:   3'- -GCGUUGcCGUUAGU-----UGgAGCGG----UGCC- -5'
26021 3' -53.6 NC_005342.2 + 852 0.68 0.693072
Target:  5'- gCGCGcugGCGGCAGcugCAGCCUUGUCGgcuucgauuuCGGc -3'
miRNA:   3'- -GCGU---UGCCGUUa--GUUGGAGCGGU----------GCC- -5'
26021 3' -53.6 NC_005342.2 + 977 0.68 0.682056
Target:  5'- uGC-ACGGCGAgCAauGCCUgCGCCGCu- -3'
miRNA:   3'- gCGuUGCCGUUaGU--UGGA-GCGGUGcc -5'
26021 3' -53.6 NC_005342.2 + 1486 0.76 0.253974
Target:  5'- aGCGACGGCgAGUCGGCCugcagcgugaUCGUCAgCGGg -3'
miRNA:   3'- gCGUUGCCG-UUAGUUGG----------AGCGGU-GCC- -5'
26021 3' -53.6 NC_005342.2 + 1893 0.66 0.788074
Target:  5'- cCGCAGCGGCGcaUAACggCGCC-CGc -3'
miRNA:   3'- -GCGUUGCCGUuaGUUGgaGCGGuGCc -5'
26021 3' -53.6 NC_005342.2 + 2255 0.66 0.807656
Target:  5'- gCGCcgagUGGCAGgccgggaCAccacGCCUCGCCGCGa -3'
miRNA:   3'- -GCGuu--GCCGUUa------GU----UGGAGCGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 2372 0.68 0.693072
Target:  5'- gGCGcCGGCGGUC-GCCuggUCGCCguacaGCGGc -3'
miRNA:   3'- gCGUuGCCGUUAGuUGG---AGCGG-----UGCC- -5'
26021 3' -53.6 NC_005342.2 + 2836 0.71 0.506182
Target:  5'- uCGCGGCGuuuGCGAaCGACgUCGCgGCGGc -3'
miRNA:   3'- -GCGUUGC---CGUUaGUUGgAGCGgUGCC- -5'
26021 3' -53.6 NC_005342.2 + 3058 0.67 0.724632
Target:  5'- aGCGuCGGCGAUCuucGCCUCGUucgacagCGCGc -3'
miRNA:   3'- gCGUuGCCGUUAGu--UGGAGCG-------GUGCc -5'
26021 3' -53.6 NC_005342.2 + 3382 0.66 0.778028
Target:  5'- uCGCGcGCGGCGAUCuuCUUCaGCgucuCGCGGc -3'
miRNA:   3'- -GCGU-UGCCGUUAGuuGGAG-CG----GUGCC- -5'
26021 3' -53.6 NC_005342.2 + 3527 0.66 0.797954
Target:  5'- gCGCcuCGGCGaacgccuucaaGUCcuCCaUCGCCugGGc -3'
miRNA:   3'- -GCGuuGCCGU-----------UAGuuGG-AGCGGugCC- -5'
26021 3' -53.6 NC_005342.2 + 3561 0.67 0.724632
Target:  5'- uGCGccacaucGCGGCGAUCGuaUUCGCCcaguCGGg -3'
miRNA:   3'- gCGU-------UGCCGUUAGUugGAGCGGu---GCC- -5'
26021 3' -53.6 NC_005342.2 + 3640 0.68 0.645422
Target:  5'- gGCAGCGGCAcgGUgcucucccacacgcCGACCaUCGCguCGGu -3'
miRNA:   3'- gCGUUGCCGU--UA--------------GUUGG-AGCGguGCC- -5'
26021 3' -53.6 NC_005342.2 + 3796 0.69 0.63762
Target:  5'- uGCAcCGGCAGgcCAagcGCCUCGCaCGCGc -3'
miRNA:   3'- gCGUuGCCGUUa-GU---UGGAGCG-GUGCc -5'
26021 3' -53.6 NC_005342.2 + 3901 0.66 0.797954
Target:  5'- aGCGGCGGCAGgcCGACCggcagguuggCGCCGu-- -3'
miRNA:   3'- gCGUUGCCGUUa-GUUGGa---------GCGGUgcc -5'
26021 3' -53.6 NC_005342.2 + 4161 0.66 0.767827
Target:  5'- uGCAGCGGC-GUguGCUucugCGCCugGa -3'
miRNA:   3'- gCGUUGCCGuUAguUGGa---GCGGugCc -5'
26021 3' -53.6 NC_005342.2 + 6123 0.67 0.704026
Target:  5'- uGCAcCGGCAAcuggcgcaccUCGcgacacGCCUCGUCGCGc -3'
miRNA:   3'- gCGUuGCCGUU----------AGU------UGGAGCGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 6571 0.69 0.626472
Target:  5'- cCGCcACGGCGcgCcGCCcagCGCCGCa- -3'
miRNA:   3'- -GCGuUGCCGUuaGuUGGa--GCGGUGcc -5'
26021 3' -53.6 NC_005342.2 + 6704 0.69 0.6042
Target:  5'- uGCAACGuGC--UCAAUUcgagCGCCACGGc -3'
miRNA:   3'- gCGUUGC-CGuuAGUUGGa---GCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.