miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26021 3' -53.6 NC_005342.2 + 47253 1.1 0.001178
Target:  5'- gCGCAACGGCAAUCAACCUCGCCACGGc -3'
miRNA:   3'- -GCGUUGCCGUUAGUUGGAGCGGUGCC- -5'
26021 3' -53.6 NC_005342.2 + 27427 0.82 0.108197
Target:  5'- gGCGACGGCuGUCGACCaggCGCCAuuCGGg -3'
miRNA:   3'- gCGUUGCCGuUAGUUGGa--GCGGU--GCC- -5'
26021 3' -53.6 NC_005342.2 + 19623 0.79 0.166911
Target:  5'- gCGCGGCGaGCGcggccgacgcuggccGUCAACagCUCGCCACGGa -3'
miRNA:   3'- -GCGUUGC-CGU---------------UAGUUG--GAGCGGUGCC- -5'
26021 3' -53.6 NC_005342.2 + 1486 0.76 0.253974
Target:  5'- aGCGACGGCgAGUCGGCCugcagcgugaUCGUCAgCGGg -3'
miRNA:   3'- gCGUUGCCG-UUAGUUGG----------AGCGGU-GCC- -5'
26021 3' -53.6 NC_005342.2 + 38412 0.75 0.281619
Target:  5'- gGUGGCGGCAA-CGAaCUCGCCACGa -3'
miRNA:   3'- gCGUUGCCGUUaGUUgGAGCGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 18358 0.75 0.281619
Target:  5'- gCGUAACGGCGugucguUUAACCUCGCCGg-- -3'
miRNA:   3'- -GCGUUGCCGUu-----AGUUGGAGCGGUgcc -5'
26021 3' -53.6 NC_005342.2 + 43116 0.75 0.303882
Target:  5'- aGCGGCGGCAG-CGGCaUCGgCACGGc -3'
miRNA:   3'- gCGUUGCCGUUaGUUGgAGCgGUGCC- -5'
26021 3' -53.6 NC_005342.2 + 28684 0.74 0.343103
Target:  5'- aCGCGgucgaacGCGGCAAUCAGCUgcgCGgCCGcCGGa -3'
miRNA:   3'- -GCGU-------UGCCGUUAGUUGGa--GC-GGU-GCC- -5'
26021 3' -53.6 NC_005342.2 + 20221 0.73 0.38766
Target:  5'- uCGUGGCGGCGAUCGACCgcgacugGCCuACGa -3'
miRNA:   3'- -GCGUUGCCGUUAGUUGGag-----CGG-UGCc -5'
26021 3' -53.6 NC_005342.2 + 9777 0.73 0.396832
Target:  5'- gGCAGC-GCAAUCAucGCgucgCGCCACGGa -3'
miRNA:   3'- gCGUUGcCGUUAGU--UGga--GCGGUGCC- -5'
26021 3' -53.6 NC_005342.2 + 13801 0.72 0.415588
Target:  5'- aGCGACGGCGAcgguUCGGCgacgggCGCCGCGu -3'
miRNA:   3'- gCGUUGCCGUU----AGUUGga----GCGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 12274 0.72 0.415588
Target:  5'- gCGCAuuGCGGCGuccugcgcgcCAGCCUCG-CGCGGg -3'
miRNA:   3'- -GCGU--UGCCGUua--------GUUGGAGCgGUGCC- -5'
26021 3' -53.6 NC_005342.2 + 20597 0.72 0.425168
Target:  5'- uGCAggcGCGGC--UCGGCCUCGCgCAguCGGg -3'
miRNA:   3'- gCGU---UGCCGuuAGUUGGAGCG-GU--GCC- -5'
26021 3' -53.6 NC_005342.2 + 32100 0.72 0.425168
Target:  5'- -aCGAUGGCGGUCAcggcGgCUCGCuCGCGGg -3'
miRNA:   3'- gcGUUGCCGUUAGU----UgGAGCG-GUGCC- -5'
26021 3' -53.6 NC_005342.2 + 39315 0.72 0.433902
Target:  5'- aCGcCGACGGCAccGUCAcgagcaaGCCgggCGCCGCGc -3'
miRNA:   3'- -GC-GUUGCCGU--UAGU-------UGGa--GCGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 38116 0.72 0.433902
Target:  5'- aCGCcggccacggucaaGACGGCGAUCGagACgCUUGCCGCGu -3'
miRNA:   3'- -GCG-------------UUGCCGUUAGU--UG-GAGCGGUGCc -5'
26021 3' -53.6 NC_005342.2 + 39895 0.72 0.434878
Target:  5'- aGCAugGGCGAUCAuccGCCgauucCGCUugGc -3'
miRNA:   3'- gCGUugCCGUUAGU---UGGa----GCGGugCc -5'
26021 3' -53.6 NC_005342.2 + 45254 0.72 0.434878
Target:  5'- cCGUGACgGGCAcgaaCAACCUCGCCgACGa -3'
miRNA:   3'- -GCGUUG-CCGUua--GUUGGAGCGG-UGCc -5'
26021 3' -53.6 NC_005342.2 + 35255 0.72 0.454677
Target:  5'- aGCuguGCGGCGGUCAgaACUUgGCC-CGGu -3'
miRNA:   3'- gCGu--UGCCGUUAGU--UGGAgCGGuGCC- -5'
26021 3' -53.6 NC_005342.2 + 18321 0.71 0.474953
Target:  5'- gCGC-ACGGCAAagCGGCCgaggaCGCCGCGc -3'
miRNA:   3'- -GCGuUGCCGUUa-GUUGGa----GCGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.