miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26022 3' -50.3 NC_005342.2 + 5179 0.66 0.909047
Target:  5'- gGCgCGGCGUcgGCA--CCGUcGCAAACu -3'
miRNA:   3'- aCG-GCCGUAa-CGUaaGGUA-CGUUUGc -5'
26022 3' -50.3 NC_005342.2 + 11695 0.66 0.909047
Target:  5'- gUGCUGGCGUccUGCGcgaugUCCG-GCAGcCGa -3'
miRNA:   3'- -ACGGCCGUA--ACGUa----AGGUaCGUUuGC- -5'
26022 3' -50.3 NC_005342.2 + 889 0.66 0.901974
Target:  5'- gGUCGGCAUUGCGcccUCGUaGCGuGCGc -3'
miRNA:   3'- aCGGCCGUAACGUaa-GGUA-CGUuUGC- -5'
26022 3' -50.3 NC_005342.2 + 11212 0.66 0.886925
Target:  5'- uUGCCGGCGcucgagUGCug-CCAgacggcccaaUGCAGGCc -3'
miRNA:   3'- -ACGGCCGUa-----ACGuaaGGU----------ACGUUUGc -5'
26022 3' -50.3 NC_005342.2 + 28732 0.66 0.878958
Target:  5'- aGCCcGUAUUGCucgagcgCCGUGCGgAACGc -3'
miRNA:   3'- aCGGcCGUAACGuaa----GGUACGU-UUGC- -5'
26022 3' -50.3 NC_005342.2 + 30409 0.66 0.878958
Target:  5'- cGCCGGCGgcgGCAacuucgUCCuggaagcugGCGAGCu -3'
miRNA:   3'- aCGGCCGUaa-CGUa-----AGGua-------CGUUUGc -5'
26022 3' -50.3 NC_005342.2 + 30738 0.66 0.870706
Target:  5'- gGCCGGCuUUGCcUUgCAguagcgGCAGugGu -3'
miRNA:   3'- aCGGCCGuAACGuAAgGUa-----CGUUugC- -5'
26022 3' -50.3 NC_005342.2 + 5365 0.67 0.862175
Target:  5'- aGCCGGCGUUgaccuguucGCGUUCUucUGCcaucGCGg -3'
miRNA:   3'- aCGGCCGUAA---------CGUAAGGu-ACGuu--UGC- -5'
26022 3' -50.3 NC_005342.2 + 34891 0.67 0.853374
Target:  5'- cGCCGGCAgUUGCAUaaCC-UGC--GCGa -3'
miRNA:   3'- aCGGCCGU-AACGUAa-GGuACGuuUGC- -5'
26022 3' -50.3 NC_005342.2 + 9576 0.67 0.852479
Target:  5'- aGCCGGCGcgGCAUcggCCGguugcgcaccggcUGCcGGCGg -3'
miRNA:   3'- aCGGCCGUaaCGUAa--GGU-------------ACGuUUGC- -5'
26022 3' -50.3 NC_005342.2 + 22022 0.67 0.844312
Target:  5'- cGCCGGCAUcgacgccgcgcGCAauagcuaCGUGCAAGCGc -3'
miRNA:   3'- aCGGCCGUAa----------CGUaag----GUACGUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 39192 0.67 0.825447
Target:  5'- cGCCGGCGcaagGCAUUgCcgGCGAc-- -3'
miRNA:   3'- aCGGCCGUaa--CGUAAgGuaCGUUugc -5'
26022 3' -50.3 NC_005342.2 + 7546 0.68 0.805668
Target:  5'- cGUCGGCg--GCAgacCCAUGCGcagGACGu -3'
miRNA:   3'- aCGGCCGuaaCGUaa-GGUACGU---UUGC- -5'
26022 3' -50.3 NC_005342.2 + 22247 0.68 0.805668
Target:  5'- gGCCGGCGa-GCAagCCAUucucGCGGGCGu -3'
miRNA:   3'- aCGGCCGUaaCGUaaGGUA----CGUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 24305 0.68 0.785071
Target:  5'- aGCCGGUg--GCGUUCCGccGCAAGg- -3'
miRNA:   3'- aCGGCCGuaaCGUAAGGUa-CGUUUgc -5'
26022 3' -50.3 NC_005342.2 + 43905 0.68 0.774498
Target:  5'- gGgCGGCGcuuugcgGCGUUCCGUGguGGCu -3'
miRNA:   3'- aCgGCCGUaa-----CGUAAGGUACguUUGc -5'
26022 3' -50.3 NC_005342.2 + 18837 0.68 0.774498
Target:  5'- cGCgCGGCAguacGCAguugCCGUGCGcAACGc -3'
miRNA:   3'- aCG-GCCGUaa--CGUaa--GGUACGU-UUGC- -5'
26022 3' -50.3 NC_005342.2 + 18556 0.69 0.764841
Target:  5'- aGCCGGCGcgGCGgcgaauccgaacccgUUCGUGCAacaAACGa -3'
miRNA:   3'- aCGGCCGUaaCGUa--------------AGGUACGU---UUGC- -5'
26022 3' -50.3 NC_005342.2 + 18382 0.69 0.76376
Target:  5'- cGCCGGCAUcaugcucgUGCcgUCCGaaGCGcAACGc -3'
miRNA:   3'- aCGGCCGUA--------ACGuaAGGUa-CGU-UUGC- -5'
26022 3' -50.3 NC_005342.2 + 12476 0.69 0.752869
Target:  5'- uUGCCGGCAUacggGCcgUCCG-GCu--CGg -3'
miRNA:   3'- -ACGGCCGUAa---CGuaAGGUaCGuuuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.