miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26022 3' -50.3 NC_005342.2 + 47025 1.09 0.002371
Target:  5'- cUGCCGGCAUUGCAUUCCAUGCAAACGc -3'
miRNA:   3'- -ACGGCCGUAACGUAAGGUACGUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 46980 0.73 0.512209
Target:  5'- cGCaGGCAUUGCucgCCGUGCAcaAAUGg -3'
miRNA:   3'- aCGgCCGUAACGuaaGGUACGU--UUGC- -5'
26022 3' -50.3 NC_005342.2 + 46040 0.72 0.591975
Target:  5'- gGCCGGUGUcgccggUGCGggCCAacuagUGCAGACGc -3'
miRNA:   3'- aCGGCCGUA------ACGUaaGGU-----ACGUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 44993 0.72 0.591975
Target:  5'- cGCCGGCGagcgucuacgGCAUUCCGuUGaCGGGCGu -3'
miRNA:   3'- aCGGCCGUaa--------CGUAAGGU-AC-GUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 43905 0.68 0.774498
Target:  5'- gGgCGGCGcuuugcgGCGUUCCGUGguGGCu -3'
miRNA:   3'- aCgGCCGUaa-----CGUAAGGUACguUUGc -5'
26022 3' -50.3 NC_005342.2 + 43385 0.72 0.557371
Target:  5'- cUGCCGGCGcgGCcgUUCAUGgaaaAGACGa -3'
miRNA:   3'- -ACGGCCGUaaCGuaAGGUACg---UUUGC- -5'
26022 3' -50.3 NC_005342.2 + 39192 0.67 0.825447
Target:  5'- cGCCGGCGcaagGCAUUgCcgGCGAc-- -3'
miRNA:   3'- aCGGCCGUaa--CGUAAgGuaCGUUugc -5'
26022 3' -50.3 NC_005342.2 + 35202 0.71 0.65026
Target:  5'- gGCCGGUga-GCGUgCCGccUGCGAGCGg -3'
miRNA:   3'- aCGGCCGuaaCGUAaGGU--ACGUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 34891 0.67 0.853374
Target:  5'- cGCCGGCAgUUGCAUaaCC-UGC--GCGa -3'
miRNA:   3'- aCGGCCGU-AACGUAa-GGuACGuuUGC- -5'
26022 3' -50.3 NC_005342.2 + 32790 0.74 0.468628
Target:  5'- cUGCCGGCcgUGCGgau--UGCGAACGc -3'
miRNA:   3'- -ACGGCCGuaACGUaagguACGUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 30738 0.66 0.870706
Target:  5'- gGCCGGCuUUGCcUUgCAguagcgGCAGugGu -3'
miRNA:   3'- aCGGCCGuAACGuAAgGUa-----CGUUugC- -5'
26022 3' -50.3 NC_005342.2 + 30409 0.66 0.878958
Target:  5'- cGCCGGCGgcgGCAacuucgUCCuggaagcugGCGAGCu -3'
miRNA:   3'- aCGGCCGUaa-CGUa-----AGGua-------CGUUUGc -5'
26022 3' -50.3 NC_005342.2 + 28732 0.66 0.878958
Target:  5'- aGCCcGUAUUGCucgagcgCCGUGCGgAACGc -3'
miRNA:   3'- aCGGcCGUAACGuaa----GGUACGU-UUGC- -5'
26022 3' -50.3 NC_005342.2 + 28629 0.75 0.387699
Target:  5'- gGCCGGCGcguacUUGCcgUCgGUGCGcAGCGg -3'
miRNA:   3'- aCGGCCGU-----AACGuaAGgUACGU-UUGC- -5'
26022 3' -50.3 NC_005342.2 + 24305 0.68 0.785071
Target:  5'- aGCCGGUg--GCGUUCCGccGCAAGg- -3'
miRNA:   3'- aCGGCCGuaaCGUAAGGUa-CGUUUgc -5'
26022 3' -50.3 NC_005342.2 + 22247 0.68 0.805668
Target:  5'- gGCCGGCGa-GCAagCCAUucucGCGGGCGu -3'
miRNA:   3'- aCGGCCGUaaCGUaaGGUA----CGUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 22022 0.67 0.844312
Target:  5'- cGCCGGCAUcgacgccgcgcGCAauagcuaCGUGCAAGCGc -3'
miRNA:   3'- aCGGCCGUAa----------CGUaag----GUACGUUUGC- -5'
26022 3' -50.3 NC_005342.2 + 21471 0.69 0.752869
Target:  5'- aUGCCGGCcgAUUGC---CUAUGCGAcucGCGa -3'
miRNA:   3'- -ACGGCCG--UAACGuaaGGUACGUU---UGC- -5'
26022 3' -50.3 NC_005342.2 + 20319 0.71 0.65026
Target:  5'- uUGCCaGGC-UUGCcggCCGUGCcGACGg -3'
miRNA:   3'- -ACGG-CCGuAACGuaaGGUACGuUUGC- -5'
26022 3' -50.3 NC_005342.2 + 18837 0.68 0.774498
Target:  5'- cGCgCGGCAguacGCAguugCCGUGCGcAACGc -3'
miRNA:   3'- aCG-GCCGUaa--CGUaa--GGUACGU-UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.