miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26022 5' -57.2 NC_005342.2 + 47059 1.15 0.000218
Target:  5'- cGGCGCACGCUACGAGGGCGCAAUGCCg -3'
miRNA:   3'- -CCGCGUGCGAUGCUCCCGCGUUACGG- -5'
26022 5' -57.2 NC_005342.2 + 1077 0.87 0.024493
Target:  5'- cGGCGCACGCUGCGGcGGCGCGccaaAUGCg -3'
miRNA:   3'- -CCGCGUGCGAUGCUcCCGCGU----UACGg -5'
26022 5' -57.2 NC_005342.2 + 11057 0.76 0.142987
Target:  5'- cGGCGCGCGUcgUGAGcGGCGUgucgccgcgcugcggGAUGCCg -3'
miRNA:   3'- -CCGCGUGCGauGCUC-CCGCG---------------UUACGG- -5'
26022 5' -57.2 NC_005342.2 + 4871 0.75 0.16218
Target:  5'- aGCGCGCGCUGCGAuaGuGCGCcGUcGCCa -3'
miRNA:   3'- cCGCGUGCGAUGCU--CcCGCGuUA-CGG- -5'
26022 5' -57.2 NC_005342.2 + 39658 0.75 0.175918
Target:  5'- gGGCGCguaACGCauaGCG-GGGCGCGA-GCCc -3'
miRNA:   3'- -CCGCG---UGCGa--UGCuCCCGCGUUaCGG- -5'
26022 5' -57.2 NC_005342.2 + 1292 0.74 0.180723
Target:  5'- cGGCGCGCGCcGCcuuGGcugcGCGCGAUGCUu -3'
miRNA:   3'- -CCGCGUGCGaUGcu-CC----CGCGUUACGG- -5'
26022 5' -57.2 NC_005342.2 + 42963 0.74 0.188653
Target:  5'- cGCGC-CGCaucugccagugagACGGGGGCGCAAggggcGCCg -3'
miRNA:   3'- cCGCGuGCGa------------UGCUCCCGCGUUa----CGG- -5'
26022 5' -57.2 NC_005342.2 + 11186 0.74 0.206523
Target:  5'- cGCGCACGUgAUucGGGCGCGGcuccuUGCCg -3'
miRNA:   3'- cCGCGUGCGaUGcuCCCGCGUU-----ACGG- -5'
26022 5' -57.2 NC_005342.2 + 16930 0.73 0.212052
Target:  5'- gGGCGC-CGUgcucgGCGucGGCGCAGgugcgGCCg -3'
miRNA:   3'- -CCGCGuGCGa----UGCucCCGCGUUa----CGG- -5'
26022 5' -57.2 NC_005342.2 + 22887 0.73 0.229404
Target:  5'- uGGCGCuCGUgACGAGcagaaGCGCGGUGCUg -3'
miRNA:   3'- -CCGCGuGCGaUGCUCc----CGCGUUACGG- -5'
26022 5' -57.2 NC_005342.2 + 17918 0.73 0.235449
Target:  5'- cGGcCGCGCGCcugGCGGGuGGCGUcgcaGGUGCg -3'
miRNA:   3'- -CC-GCGUGCGa--UGCUC-CCGCG----UUACGg -5'
26022 5' -57.2 NC_005342.2 + 19492 0.72 0.24794
Target:  5'- cGGCGCugGC-GCGcuGGcGGCGCucgugGCCg -3'
miRNA:   3'- -CCGCGugCGaUGC--UC-CCGCGuua--CGG- -5'
26022 5' -57.2 NC_005342.2 + 41229 0.72 0.260974
Target:  5'- aGGCGCGCGac-CG-GGGCGCcGUGgCg -3'
miRNA:   3'- -CCGCGUGCgauGCuCCCGCGuUACgG- -5'
26022 5' -57.2 NC_005342.2 + 4921 0.72 0.267698
Target:  5'- uGCGuCugGUugUACcAGGGCGCAAUGgCCg -3'
miRNA:   3'- cCGC-GugCG--AUGcUCCCGCGUUAC-GG- -5'
26022 5' -57.2 NC_005342.2 + 21857 0.72 0.267698
Target:  5'- cGGCGCGCGCUACaagcuGGuucgcuGCGCAuaGCCc -3'
miRNA:   3'- -CCGCGUGCGAUGcu---CC------CGCGUuaCGG- -5'
26022 5' -57.2 NC_005342.2 + 38221 0.72 0.267698
Target:  5'- uGGCGCuCGUUgACGAcGGGCGCGcauccggcgcucAUGUCg -3'
miRNA:   3'- -CCGCGuGCGA-UGCU-CCCGCGU------------UACGG- -5'
26022 5' -57.2 NC_005342.2 + 10588 0.72 0.270426
Target:  5'- gGGCGCGCGCU-CGAugaaugucugauccGGCGgGAUGUCg -3'
miRNA:   3'- -CCGCGUGCGAuGCUc-------------CCGCgUUACGG- -5'
26022 5' -57.2 NC_005342.2 + 36064 0.72 0.281564
Target:  5'- uGGCGCGCGCgcCGcu-GCGCA-UGCCg -3'
miRNA:   3'- -CCGCGUGCGauGCuccCGCGUuACGG- -5'
26022 5' -57.2 NC_005342.2 + 26830 0.72 0.281564
Target:  5'- uGCGCGCGCU-CGuucAGGGCGCuc-GCg -3'
miRNA:   3'- cCGCGUGCGAuGC---UCCCGCGuuaCGg -5'
26022 5' -57.2 NC_005342.2 + 33003 0.71 0.295994
Target:  5'- aGCGCACGCguUGCGucGGCcGCAucgaGCCa -3'
miRNA:   3'- cCGCGUGCG--AUGCucCCG-CGUua--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.