miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26022 5' -57.2 NC_005342.2 + 4871 0.75 0.16218
Target:  5'- aGCGCGCGCUGCGAuaGuGCGCcGUcGCCa -3'
miRNA:   3'- cCGCGUGCGAUGCU--CcCGCGuUA-CGG- -5'
26022 5' -57.2 NC_005342.2 + 17002 0.69 0.394497
Target:  5'- cGUGCACGCUGCaGGccaauGGCGUcAUGCUc -3'
miRNA:   3'- cCGCGUGCGAUGcUC-----CCGCGuUACGG- -5'
26022 5' -57.2 NC_005342.2 + 36893 0.69 0.394497
Target:  5'- cGGCGaCACGCcgcucACGAcGcGCGCcGGUGCCa -3'
miRNA:   3'- -CCGC-GUGCGa----UGCUcC-CGCG-UUACGG- -5'
26022 5' -57.2 NC_005342.2 + 44150 0.66 0.597493
Target:  5'- cGGCGCG---UGCGA-GGCGCuugGCCu -3'
miRNA:   3'- -CCGCGUgcgAUGCUcCCGCGuuaCGG- -5'
26022 5' -57.2 NC_005342.2 + 19492 0.72 0.24794
Target:  5'- cGGCGCugGC-GCGcuGGcGGCGCucgugGCCg -3'
miRNA:   3'- -CCGCGugCGaUGC--UC-CCGCGuua--CGG- -5'
26022 5' -57.2 NC_005342.2 + 4921 0.72 0.267698
Target:  5'- uGCGuCugGUugUACcAGGGCGCAAUGgCCg -3'
miRNA:   3'- cCGC-GugCG--AUGcUCCCGCGUUAC-GG- -5'
26022 5' -57.2 NC_005342.2 + 33003 0.71 0.295994
Target:  5'- aGCGCACGCguUGCGucGGCcGCAucgaGCCa -3'
miRNA:   3'- cCGCGUGCG--AUGCucCCG-CGUua--CGG- -5'
26022 5' -57.2 NC_005342.2 + 9210 0.71 0.310993
Target:  5'- cGCGC-CGa-ACGGGGGCGCcucGCCg -3'
miRNA:   3'- cCGCGuGCgaUGCUCCCGCGuuaCGG- -5'
26022 5' -57.2 NC_005342.2 + 45375 0.7 0.332147
Target:  5'- cGCGCGCGCUGCGcAugcaccuaccgagcGGGCGCGcgaucaGCUa -3'
miRNA:   3'- cCGCGUGCGAUGC-U--------------CCCGCGUua----CGG- -5'
26022 5' -57.2 NC_005342.2 + 44110 0.69 0.384629
Target:  5'- cGGCGCGCGCUcgcuacaACGGcuugccGGGUucGCu-UGCCg -3'
miRNA:   3'- -CCGCGUGCGA-------UGCU------CCCG--CGuuACGG- -5'
26022 5' -57.2 NC_005342.2 + 1261 0.7 0.342703
Target:  5'- uGGCGCGCGUUGCGuuacgcgaucGGCGUGAauUGCa -3'
miRNA:   3'- -CCGCGUGCGAUGCuc--------CCGCGUU--ACGg -5'
26022 5' -57.2 NC_005342.2 + 46073 0.7 0.326562
Target:  5'- uGCGC-CGCUGCGGauuuGGCGCg--GCCu -3'
miRNA:   3'- cCGCGuGCGAUGCUc---CCGCGuuaCGG- -5'
26022 5' -57.2 NC_005342.2 + 42963 0.74 0.188653
Target:  5'- cGCGC-CGCaucugccagugagACGGGGGCGCAAggggcGCCg -3'
miRNA:   3'- cCGCGuGCGa------------UGCUCCCGCGUUa----CGG- -5'
26022 5' -57.2 NC_005342.2 + 28494 0.7 0.342703
Target:  5'- cGCGCGgGUcGCGGcGGCGCGGcUGCCc -3'
miRNA:   3'- cCGCGUgCGaUGCUcCCGCGUU-ACGG- -5'
26022 5' -57.2 NC_005342.2 + 11186 0.74 0.206523
Target:  5'- cGCGCACGUgAUucGGGCGCGGcuccuUGCCg -3'
miRNA:   3'- cCGCGUGCGaUGcuCCCGCGUU-----ACGG- -5'
26022 5' -57.2 NC_005342.2 + 6626 0.7 0.326562
Target:  5'- cGGCaGCGCGCUcgGCGcgcucgagcAGGcGCGCAuccGCCg -3'
miRNA:   3'- -CCG-CGUGCGA--UGC---------UCC-CGCGUua-CGG- -5'
26022 5' -57.2 NC_005342.2 + 25221 0.7 0.350986
Target:  5'- cGCG-ACGCUGCcauucGGGUucGCAAUGCCg -3'
miRNA:   3'- cCGCgUGCGAUGcu---CCCG--CGUUACGG- -5'
26022 5' -57.2 NC_005342.2 + 18793 0.69 0.394497
Target:  5'- cGCGCuuaucGCGCggcCGcAGGGCGC-GUGCUg -3'
miRNA:   3'- cCGCG-----UGCGau-GC-UCCCGCGuUACGG- -5'
26022 5' -57.2 NC_005342.2 + 22887 0.73 0.229404
Target:  5'- uGGCGCuCGUgACGAGcagaaGCGCGGUGCUg -3'
miRNA:   3'- -CCGCGuGCGaUGCUCc----CGCGUUACGG- -5'
26022 5' -57.2 NC_005342.2 + 21857 0.72 0.267698
Target:  5'- cGGCGCGCGCUACaagcuGGuucgcuGCGCAuaGCCc -3'
miRNA:   3'- -CCGCGUGCGAUGcu---CC------CGCGUuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.