miRNA display CGI


Results 1 - 20 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26022 5' -57.2 NC_005342.2 + 1077 0.87 0.024493
Target:  5'- cGGCGCACGCUGCGGcGGCGCGccaaAUGCg -3'
miRNA:   3'- -CCGCGUGCGAUGCUcCCGCGU----UACGg -5'
26022 5' -57.2 NC_005342.2 + 1261 0.7 0.342703
Target:  5'- uGGCGCGCGUUGCGuuacgcgaucGGCGUGAauUGCa -3'
miRNA:   3'- -CCGCGUGCGAUGCuc--------CCGCGUU--ACGg -5'
26022 5' -57.2 NC_005342.2 + 1292 0.74 0.180723
Target:  5'- cGGCGCGCGCcGCcuuGGcugcGCGCGAUGCUu -3'
miRNA:   3'- -CCGCGUGCGaUGcu-CC----CGCGUUACGG- -5'
26022 5' -57.2 NC_005342.2 + 4199 0.68 0.460955
Target:  5'- cGCGUugACGCU-CGAGaacaucGGCGUgagGAUGCCg -3'
miRNA:   3'- cCGCG--UGCGAuGCUC------CCGCG---UUACGG- -5'
26022 5' -57.2 NC_005342.2 + 4325 0.7 0.342703
Target:  5'- gGGUaucgGUGCGCUACGuGGcguuuggucGCGCAGUGCg -3'
miRNA:   3'- -CCG----CGUGCGAUGCuCC---------CGCGUUACGg -5'
26022 5' -57.2 NC_005342.2 + 4658 0.68 0.460955
Target:  5'- cGCGCAcuCGCguucgagGCGAGcGCGCGAcacGCCa -3'
miRNA:   3'- cCGCGU--GCGa------UGCUCcCGCGUUa--CGG- -5'
26022 5' -57.2 NC_005342.2 + 4871 0.75 0.16218
Target:  5'- aGCGCGCGCUGCGAuaGuGCGCcGUcGCCa -3'
miRNA:   3'- cCGCGUGCGAUGCU--CcCGCGuUA-CGG- -5'
26022 5' -57.2 NC_005342.2 + 4921 0.72 0.267698
Target:  5'- uGCGuCugGUugUACcAGGGCGCAAUGgCCg -3'
miRNA:   3'- cCGC-GugCG--AUGcUCCCGCGUUAC-GG- -5'
26022 5' -57.2 NC_005342.2 + 5025 0.68 0.460955
Target:  5'- cGGCuGUugGCcgACGucGGCGCGGcGCUg -3'
miRNA:   3'- -CCG-CGugCGa-UGCucCCGCGUUaCGG- -5'
26022 5' -57.2 NC_005342.2 + 5262 0.7 0.35941
Target:  5'- aGCGCcgccCGCUcguccgccgGCGAGGGUGCGGguUGCa -3'
miRNA:   3'- cCGCGu---GCGA---------UGCUCCCGCGUU--ACGg -5'
26022 5' -57.2 NC_005342.2 + 6626 0.7 0.326562
Target:  5'- cGGCaGCGCGCUcgGCGcgcucgagcAGGcGCGCAuccGCCg -3'
miRNA:   3'- -CCG-CGUGCGA--UGC---------UCC-CGCGUua-CGG- -5'
26022 5' -57.2 NC_005342.2 + 6892 0.7 0.342703
Target:  5'- uGCGCACGUuugaggcgUGCGcGGGCGcCAGUcgaaGCCu -3'
miRNA:   3'- cCGCGUGCG--------AUGCuCCCGC-GUUA----CGG- -5'
26022 5' -57.2 NC_005342.2 + 7467 0.66 0.543498
Target:  5'- cGCGUGC-CUGCGgccAGGucuGCGCGAUGCg -3'
miRNA:   3'- cCGCGUGcGAUGC---UCC---CGCGUUACGg -5'
26022 5' -57.2 NC_005342.2 + 9069 0.69 0.422226
Target:  5'- aGCGCGCGCagcACGGGcGGCagGAUGUCg -3'
miRNA:   3'- cCGCGUGCGa--UGCUC-CCGcgUUACGG- -5'
26022 5' -57.2 NC_005342.2 + 9210 0.71 0.310993
Target:  5'- cGCGC-CGa-ACGGGGGCGCcucGCCg -3'
miRNA:   3'- cCGCGuGCgaUGCUCCCGCGuuaCGG- -5'
26022 5' -57.2 NC_005342.2 + 9311 0.66 0.564943
Target:  5'- cGGCGCuuuCGUguucguCGucGGCGCGcgGCg -3'
miRNA:   3'- -CCGCGu--GCGau----GCucCCGCGUuaCGg -5'
26022 5' -57.2 NC_005342.2 + 9363 0.69 0.422226
Target:  5'- cGGCGCggguGCGCggACGGGcGGCGUucguAUGgCg -3'
miRNA:   3'- -CCGCG----UGCGa-UGCUC-CCGCGu---UACgG- -5'
26022 5' -57.2 NC_005342.2 + 9598 0.67 0.511861
Target:  5'- uGCGCACcgGCUGCcGGcGGCGCGccugcGCCc -3'
miRNA:   3'- cCGCGUG--CGAUGcUC-CCGCGUua---CGG- -5'
26022 5' -57.2 NC_005342.2 + 9684 0.68 0.442319
Target:  5'- cGGCGCACGCgguucgcgaaacgccGCGucGGCGaCAugagcGCCg -3'
miRNA:   3'- -CCGCGUGCGa--------------UGCucCCGC-GUua---CGG- -5'
26022 5' -57.2 NC_005342.2 + 10588 0.72 0.270426
Target:  5'- gGGCGCGCGCU-CGAugaaugucugauccGGCGgGAUGUCg -3'
miRNA:   3'- -CCGCGUGCGAuGCUc-------------CCGCgUUACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.