miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26024 5' -60.5 NC_005342.2 + 45928 1.07 0.000362
Target:  5'- aUACCGCACUCUACCGCGCGGGCGUCGa -3'
miRNA:   3'- -AUGGCGUGAGAUGGCGCGCCCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 29123 0.78 0.065286
Target:  5'- aACUGCGuaCUGCCGCGCGGGCuUCGa -3'
miRNA:   3'- aUGGCGUgaGAUGGCGCGCCCGcAGC- -5'
26024 5' -60.5 NC_005342.2 + 25917 0.75 0.107922
Target:  5'- cGCuUGCACguagCUAUUGCGCGcGGCGUCGa -3'
miRNA:   3'- aUG-GCGUGa---GAUGGCGCGC-CCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 34219 0.74 0.123795
Target:  5'- cGCCGCGCga-GCgGCGCGcGGCGUCc -3'
miRNA:   3'- aUGGCGUGagaUGgCGCGC-CCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 17001 0.74 0.12722
Target:  5'- gACgGCGCUgcGCCGCGCGGcCGUCGc -3'
miRNA:   3'- aUGgCGUGAgaUGGCGCGCCcGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 28482 0.73 0.145691
Target:  5'- cGCCGCG-UCgACCGCGCGGGuCG-CGg -3'
miRNA:   3'- aUGGCGUgAGaUGGCGCGCCC-GCaGC- -5'
26024 5' -60.5 NC_005342.2 + 4147 0.72 0.153743
Target:  5'- cGCCGCGCUCgUGCUGCaGCGGcGUGUg- -3'
miRNA:   3'- aUGGCGUGAG-AUGGCG-CGCC-CGCAgc -5'
26024 5' -60.5 NC_005342.2 + 14548 0.72 0.171066
Target:  5'- cGCuUGUACcaUCUACCGCaGgGGGCGUCGc -3'
miRNA:   3'- aUG-GCGUG--AGAUGGCG-CgCCCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 4829 0.71 0.185184
Target:  5'- -cCCGaGCgUCUGCCuGCGCGGGCGgcugCGg -3'
miRNA:   3'- auGGCgUG-AGAUGG-CGCGCCCGCa---GC- -5'
26024 5' -60.5 NC_005342.2 + 17609 0.71 0.188128
Target:  5'- cGCCGCGCcUUGCCGCGCugcugcacgaccuGGCGUCc -3'
miRNA:   3'- aUGGCGUGaGAUGGCGCGc------------CCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 12543 0.7 0.21652
Target:  5'- aGCCGaCACUCgcguUCGCGacugaaGGGCGUCu -3'
miRNA:   3'- aUGGC-GUGAGau--GGCGCg-----CCCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 21986 0.7 0.224457
Target:  5'- gGCCGUuuuCUUUGCgucggcgcgaaucagCGCGCGGGCGUUu -3'
miRNA:   3'- aUGGCGu--GAGAUG---------------GCGCGCCCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 44677 0.7 0.227351
Target:  5'- aACCGCGCgCcGCCGCGCgcacaaggagaaaGGGCGUa- -3'
miRNA:   3'- aUGGCGUGaGaUGGCGCG-------------CCCGCAgc -5'
26024 5' -60.5 NC_005342.2 + 45381 0.7 0.227933
Target:  5'- cGCUGCGCaugcacCUACCGaGCGGGCGcgCGa -3'
miRNA:   3'- aUGGCGUGa-----GAUGGCgCGCCCGCa-GC- -5'
26024 5' -60.5 NC_005342.2 + 29360 0.7 0.227933
Target:  5'- -cCCGCGC-CUGCCGCGCcGGuCGUUu -3'
miRNA:   3'- auGGCGUGaGAUGGCGCGcCC-GCAGc -5'
26024 5' -60.5 NC_005342.2 + 28912 0.69 0.252287
Target:  5'- cGCUGCGCgcacCCGCGCauGGCGUCGu -3'
miRNA:   3'- aUGGCGUGagauGGCGCGc-CCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 22850 0.69 0.258701
Target:  5'- cGCCGUGCUC-GCCGUGCccgGGGUGaCGg -3'
miRNA:   3'- aUGGCGUGAGaUGGCGCG---CCCGCaGC- -5'
26024 5' -60.5 NC_005342.2 + 28339 0.69 0.263269
Target:  5'- gGCCGCGCUC-GCCGCGCucGccgugaccuuguucGCGUCGu -3'
miRNA:   3'- aUGGCGUGAGaUGGCGCGc-C--------------CGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 44780 0.69 0.265247
Target:  5'- cACCGCGCg--GCCGCGCccGGGCa--- -3'
miRNA:   3'- aUGGCGUGagaUGGCGCG--CCCGcagc -5'
26024 5' -60.5 NC_005342.2 + 45968 0.69 0.265247
Target:  5'- gGCCGUgACgUCgggcaucauCCGCGCGGGCGUg- -3'
miRNA:   3'- aUGGCG-UG-AGau-------GGCGCGCCCGCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.