miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26024 5' -60.5 NC_005342.2 + 814 0.67 0.354396
Target:  5'- cGCCuGCGCgUCgcuCgGCGCGGGUGUUu -3'
miRNA:   3'- aUGG-CGUG-AGau-GgCGCGCCCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 3175 0.67 0.346214
Target:  5'- uUGCCcggGCGCg--GCCGCGCGGuguucaGCGUCu -3'
miRNA:   3'- -AUGG---CGUGagaUGGCGCGCC------CGCAGc -5'
26024 5' -60.5 NC_005342.2 + 4066 0.68 0.285691
Target:  5'- cGCCGC-CcUUGCCGaGCGGGCG-CGa -3'
miRNA:   3'- aUGGCGuGaGAUGGCgCGCCCGCaGC- -5'
26024 5' -60.5 NC_005342.2 + 4147 0.72 0.153743
Target:  5'- cGCCGCGCUCgUGCUGCaGCGGcGUGUg- -3'
miRNA:   3'- aUGGCGUGAG-AUGGCG-CGCC-CGCAgc -5'
26024 5' -60.5 NC_005342.2 + 4829 0.71 0.185184
Target:  5'- -cCCGaGCgUCUGCCuGCGCGGGCGgcugCGg -3'
miRNA:   3'- auGGCgUG-AGAUGG-CGCGCCCGCa---GC- -5'
26024 5' -60.5 NC_005342.2 + 6890 0.66 0.406288
Target:  5'- uUugCGCACguuugagGCgUGCGCGGGCGcCa -3'
miRNA:   3'- -AugGCGUGaga----UG-GCGCGCCCGCaGc -5'
26024 5' -60.5 NC_005342.2 + 9956 0.66 0.406288
Target:  5'- aACCGCcgacguACUCU-UUGCGCGGuuGUCGg -3'
miRNA:   3'- aUGGCG------UGAGAuGGCGCGCCcgCAGC- -5'
26024 5' -60.5 NC_005342.2 + 10835 0.68 0.32249
Target:  5'- --aCGCGCUUgacGCCGCGCGGGaagaaCGcCGg -3'
miRNA:   3'- augGCGUGAGa--UGGCGCGCCC-----GCaGC- -5'
26024 5' -60.5 NC_005342.2 + 12543 0.7 0.21652
Target:  5'- aGCCGaCACUCgcguUCGCGacugaaGGGCGUCu -3'
miRNA:   3'- aUGGC-GUGAGau--GGCGCg-----CCCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 13737 0.67 0.338169
Target:  5'- cGCCGCGCgCcGCuCGCGCGGcGUGUa- -3'
miRNA:   3'- aUGGCGUGaGaUG-GCGCGCC-CGCAgc -5'
26024 5' -60.5 NC_005342.2 + 13869 0.67 0.371164
Target:  5'- gGCCgGCACgg-GCUGCGCGGcggcCGUCGc -3'
miRNA:   3'- aUGG-CGUGagaUGGCGCGCCc---GCAGC- -5'
26024 5' -60.5 NC_005342.2 + 14548 0.72 0.171066
Target:  5'- cGCuUGUACcaUCUACCGCaGgGGGCGUCGc -3'
miRNA:   3'- aUG-GCGUG--AGAUGGCG-CgCCCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 15407 0.68 0.307359
Target:  5'- gGCCGCGCUCaUGuuGCaCGuGGCGUUc -3'
miRNA:   3'- aUGGCGUGAG-AUggCGcGC-CCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 16758 0.68 0.283592
Target:  5'- gUACCGCgacuucaucauuucACUCaucCCGC-CGGGUGUCGa -3'
miRNA:   3'- -AUGGCG--------------UGAGau-GGCGcGCCCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 16918 0.66 0.424615
Target:  5'- gGCCgGCAUUgCgggcGCCGUGCucGGCGUCGg -3'
miRNA:   3'- aUGG-CGUGA-Ga---UGGCGCGc-CCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 16988 0.67 0.338967
Target:  5'- cGCCGCGCUCgACuCGUGCacgcugcaggccaauGGCGUCa -3'
miRNA:   3'- aUGGCGUGAGaUG-GCGCGc--------------CCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 17001 0.74 0.12722
Target:  5'- gACgGCGCUgcGCCGCGCGGcCGUCGc -3'
miRNA:   3'- aUGgCGUGAgaUGGCGCGCCcGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 17609 0.71 0.188128
Target:  5'- cGCCGCGCcUUGCCGCGCugcugcacgaccuGGCGUCc -3'
miRNA:   3'- aUGGCGUGaGAUGGCGCGc------------CCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 17910 0.67 0.362713
Target:  5'- cGCCgGUGCg--GCCGCGCGccuggcggguGGCGUCGc -3'
miRNA:   3'- aUGG-CGUGagaUGGCGCGC----------CCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 18004 0.69 0.278742
Target:  5'- --aCGCGCUgauCgCGCGCGGcGCGUCGa -3'
miRNA:   3'- augGCGUGAgauG-GCGCGCC-CGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.