miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26024 5' -60.5 NC_005342.2 + 25917 0.75 0.107922
Target:  5'- cGCuUGCACguagCUAUUGCGCGcGGCGUCGa -3'
miRNA:   3'- aUG-GCGUGa---GAUGGCGCGC-CCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 31336 0.66 0.379749
Target:  5'- gGCCGCugUg-GCCGCGCGcGuGaacaGUCGg -3'
miRNA:   3'- aUGGCGugAgaUGGCGCGC-C-Cg---CAGC- -5'
26024 5' -60.5 NC_005342.2 + 42965 0.66 0.379749
Target:  5'- cGCCGCA-UCUGCCagugagacggggGCGCaagGGGCGcCGa -3'
miRNA:   3'- aUGGCGUgAGAUGG------------CGCG---CCCGCaGC- -5'
26024 5' -60.5 NC_005342.2 + 24863 0.66 0.424615
Target:  5'- aACCGCACgggaUAUUGCGgauaGGGCGgCGg -3'
miRNA:   3'- aUGGCGUGag--AUGGCGCg---CCCGCaGC- -5'
26024 5' -60.5 NC_005342.2 + 45381 0.7 0.227933
Target:  5'- cGCUGCGCaugcacCUACCGaGCGGGCGcgCGa -3'
miRNA:   3'- aUGGCGUGa-----GAUGGCgCGCCCGCa-GC- -5'
26024 5' -60.5 NC_005342.2 + 28912 0.69 0.252287
Target:  5'- cGCUGCGCgcacCCGCGCauGGCGUCGu -3'
miRNA:   3'- aUGGCGUGagauGGCGCGc-CCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 16758 0.68 0.283592
Target:  5'- gUACCGCgacuucaucauuucACUCaucCCGC-CGGGUGUCGa -3'
miRNA:   3'- -AUGGCG--------------UGAGau-GGCGcGCCCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 18790 0.68 0.28499
Target:  5'- aACCGCGCUU-AUCGCGCggccgcaGGGCG-CGu -3'
miRNA:   3'- aUGGCGUGAGaUGGCGCG-------CCCGCaGC- -5'
26024 5' -60.5 NC_005342.2 + 10835 0.68 0.32249
Target:  5'- --aCGCGCUUgacGCCGCGCGGGaagaaCGcCGg -3'
miRNA:   3'- augGCGUGAGa--UGGCGCGCCC-----GCaGC- -5'
26024 5' -60.5 NC_005342.2 + 29608 0.67 0.371164
Target:  5'- cGCUGCGCgaUCggGCCaCGCGcGGCGUCc -3'
miRNA:   3'- aUGGCGUG--AGa-UGGcGCGC-CCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 13737 0.67 0.338169
Target:  5'- cGCCGCGCgCcGCuCGCGCGGcGUGUa- -3'
miRNA:   3'- aUGGCGUGaGaUG-GCGCGCC-CGCAgc -5'
26024 5' -60.5 NC_005342.2 + 44736 0.68 0.285691
Target:  5'- gGCCGCuCg--ACCGCGCGuGGCGcuggCGg -3'
miRNA:   3'- aUGGCGuGagaUGGCGCGC-CCGCa---GC- -5'
26024 5' -60.5 NC_005342.2 + 28482 0.73 0.145691
Target:  5'- cGCCGCG-UCgACCGCGCGGGuCG-CGg -3'
miRNA:   3'- aUGGCGUgAGaUGGCGCGCCC-GCaGC- -5'
26024 5' -60.5 NC_005342.2 + 16988 0.67 0.338967
Target:  5'- cGCCGCGCUCgACuCGUGCacgcugcaggccaauGGCGUCa -3'
miRNA:   3'- aUGGCGUGAGaUG-GCGCGc--------------CCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 4147 0.72 0.153743
Target:  5'- cGCCGCGCUCgUGCUGCaGCGGcGUGUg- -3'
miRNA:   3'- aUGGCGUGAG-AUGGCG-CGCC-CGCAgc -5'
26024 5' -60.5 NC_005342.2 + 4066 0.68 0.285691
Target:  5'- cGCCGC-CcUUGCCGaGCGGGCG-CGa -3'
miRNA:   3'- aUGGCGuGaGAUGGCgCGCCCGCaGC- -5'
26024 5' -60.5 NC_005342.2 + 13869 0.67 0.371164
Target:  5'- gGCCgGCACgg-GCUGCGCGGcggcCGUCGc -3'
miRNA:   3'- aUGG-CGUGagaUGGCGCGCCc---GCAGC- -5'
26024 5' -60.5 NC_005342.2 + 44324 0.66 0.379749
Target:  5'- cACCGUGCcgCUgccGCCGCGCGagcaGGCGUa- -3'
miRNA:   3'- aUGGCGUGa-GA---UGGCGCGC----CCGCAgc -5'
26024 5' -60.5 NC_005342.2 + 21986 0.7 0.224457
Target:  5'- gGCCGUuuuCUUUGCgucggcgcgaaucagCGCGCGGGCGUUu -3'
miRNA:   3'- aUGGCGu--GAGAUG---------------GCGCGCCCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 44780 0.69 0.265247
Target:  5'- cACCGCGCg--GCCGCGCccGGGCa--- -3'
miRNA:   3'- aUGGCGUGagaUGGCGCG--CCCGcagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.