Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26026 | 3' | -53.6 | NC_005342.2 | + | 45206 | 1.1 | 0.001396 |
Target: 5'- gCUUCACGGUCGUGACGAACGCGACCGg -3' miRNA: 3'- -GAAGUGCCAGCACUGCUUGCGCUGGC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 19613 | 0.83 | 0.102652 |
Target: 5'- -gUCACGGcgagCGcGGCGAGCGCGGCCGa -3' miRNA: 3'- gaAGUGCCa---GCaCUGCUUGCGCUGGC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 28231 | 0.73 | 0.431169 |
Target: 5'- -gUCACGGUgacCGUGACGcgcACGCGGCg- -3' miRNA: 3'- gaAGUGCCA---GCACUGCu--UGCGCUGgc -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 44967 | 0.72 | 0.450676 |
Target: 5'- gUUCGCGcgcuacGUCGcGGCGGACGCG-CCGg -3' miRNA: 3'- gAAGUGC------CAGCaCUGCUUGCGCuGGC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 37157 | 0.72 | 0.480815 |
Target: 5'- ---uGCGG-CGUGACGAACgGCG-CCGa -3' miRNA: 3'- gaagUGCCaGCACUGCUUG-CGCuGGC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 39374 | 0.71 | 0.533082 |
Target: 5'- aCUUCACGGUCGccgaGGCG-GCGCGcuuCCu -3' miRNA: 3'- -GAAGUGCCAGCa---CUGCuUGCGCu--GGc -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 20154 | 0.71 | 0.543789 |
Target: 5'- gCUUCGUGGUCGacuacucGGCGGACaCGACCGa -3' miRNA: 3'- -GAAGUGCCAGCa------CUGCUUGcGCUGGC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 29667 | 0.7 | 0.565404 |
Target: 5'- --gCGCGaGaagcgCGUGcCGAGCGCGGCCGc -3' miRNA: 3'- gaaGUGC-Ca----GCACuGCUUGCGCUGGC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 23227 | 0.7 | 0.565404 |
Target: 5'- -aUCACGG-CG--GCGAACGCG-CCGg -3' miRNA: 3'- gaAGUGCCaGCacUGCUUGCGCuGGC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 28684 | 0.7 | 0.576297 |
Target: 5'- --aCGCGGUCGaacGCGGcaaucagcuGCGCGGCCGc -3' miRNA: 3'- gaaGUGCCAGCac-UGCU---------UGCGCUGGC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 15584 | 0.7 | 0.587237 |
Target: 5'- -gUCACGGUUucGGCGAACGuCGuGCCGu -3' miRNA: 3'- gaAGUGCCAGcaCUGCUUGC-GC-UGGC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 39807 | 0.7 | 0.587237 |
Target: 5'- -cUCAcCGaGUaCGcGAUGGACGCGGCCGa -3' miRNA: 3'- gaAGU-GC-CA-GCaCUGCUUGCGCUGGC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 38295 | 0.7 | 0.591624 |
Target: 5'- gUUCGCGGgcaUCGUGAagcgccagcuacagcCGGGCGCG-CCGc -3' miRNA: 3'- gAAGUGCC---AGCACU---------------GCUUGCGCuGGC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 11842 | 0.69 | 0.60922 |
Target: 5'- -gUCugcCGGUCGgccgaGACGGGCGCGAgCa -3' miRNA: 3'- gaAGu--GCCAGCa----CUGCUUGCGCUgGc -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 42645 | 0.69 | 0.619143 |
Target: 5'- --cCACGGcggCGUGACGAuccaGCGCGAaggcgcgaaagacCCGa -3' miRNA: 3'- gaaGUGCCa--GCACUGCU----UGCGCU-------------GGC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 31491 | 0.69 | 0.631283 |
Target: 5'- -cUCGCGuGUCGUG-CGAcAUGCGcCCGa -3' miRNA: 3'- gaAGUGC-CAGCACuGCU-UGCGCuGGC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 40569 | 0.69 | 0.631283 |
Target: 5'- cCUUC-UGGUCGccGGCGAuggucGCGCGACuCGg -3' miRNA: 3'- -GAAGuGCCAGCa-CUGCU-----UGCGCUG-GC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 32793 | 0.69 | 0.631283 |
Target: 5'- ----cCGGcCGUGcggauuGCGAACGCGACCu -3' miRNA: 3'- gaaguGCCaGCAC------UGCUUGCGCUGGc -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 11941 | 0.69 | 0.631283 |
Target: 5'- cCUUgCACGcagCGUcGACGAuCGCGGCCGu -3' miRNA: 3'- -GAA-GUGCca-GCA-CUGCUuGCGCUGGC- -5' |
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26026 | 3' | -53.6 | NC_005342.2 | + | 27078 | 0.69 | 0.639009 |
Target: 5'- uUUCGCGGaUCaguuUGACGAucauccauuccugcGCGCGACCc -3' miRNA: 3'- gAAGUGCC-AGc---ACUGCU--------------UGCGCUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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