miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26026 3' -53.6 NC_005342.2 + 2104 0.67 0.749361
Target:  5'- -aUCACGG-CGUGAuccucgaacuugcCGuAGCGCGcACCGc -3'
miRNA:   3'- gaAGUGCCaGCACU-------------GC-UUGCGC-UGGC- -5'
26026 3' -53.6 NC_005342.2 + 2570 0.66 0.819549
Target:  5'- ---gGCGGUCGUGAaGGucgcccaauuGCGCGACa- -3'
miRNA:   3'- gaagUGCCAGCACUgCU----------UGCGCUGgc -5'
26026 3' -53.6 NC_005342.2 + 2607 0.69 0.641217
Target:  5'- cCUUCACGaaCGUGaucuGCGAGCaguuguuGCGACCGa -3'
miRNA:   3'- -GAAGUGCcaGCAC----UGCUUG-------CGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 4664 0.67 0.760733
Target:  5'- -cUCGCGuUCGaGGCGAgcGCGCGACaCGc -3'
miRNA:   3'- gaAGUGCcAGCaCUGCU--UGCGCUG-GC- -5'
26026 3' -53.6 NC_005342.2 + 8488 0.67 0.770933
Target:  5'- gUUCGCGaagaaGUCGcccgUGcCGAacaGCGCGACCGg -3'
miRNA:   3'- gAAGUGC-----CAGC----ACuGCU---UGCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 8955 0.66 0.819549
Target:  5'- ---uGCGGcCGUGcGCGGcgGCGACCGa -3'
miRNA:   3'- gaagUGCCaGCAC-UGCUugCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 9263 0.66 0.820475
Target:  5'- gCUUCACGGUCGgguuuucacCGCcGGCCGg -3'
miRNA:   3'- -GAAGUGCCAGCacugcuu--GCG-CUGGC- -5'
26026 3' -53.6 NC_005342.2 + 10697 0.68 0.707978
Target:  5'- aUUgACGGUCGUuuucccgacuGGCGGcguaucguaccGCGCGGCCc -3'
miRNA:   3'- gAAgUGCCAGCA----------CUGCU-----------UGCGCUGGc -5'
26026 3' -53.6 NC_005342.2 + 11842 0.69 0.60922
Target:  5'- -gUCugcCGGUCGgccgaGACGGGCGCGAgCa -3'
miRNA:   3'- gaAGu--GCCAGCa----CUGCUUGCGCUgGc -5'
26026 3' -53.6 NC_005342.2 + 11941 0.69 0.631283
Target:  5'- cCUUgCACGcagCGUcGACGAuCGCGGCCGu -3'
miRNA:   3'- -GAA-GUGCca-GCA-CUGCUuGCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 13328 0.66 0.790889
Target:  5'- --gCACGGU-GU-ACGGGCGCGGCaCGa -3'
miRNA:   3'- gaaGUGCCAgCAcUGCUUGCGCUG-GC- -5'
26026 3' -53.6 NC_005342.2 + 15584 0.7 0.587237
Target:  5'- -gUCACGGUUucGGCGAACGuCGuGCCGu -3'
miRNA:   3'- gaAGUGCCAGcaCUGCUUGC-GC-UGGC- -5'
26026 3' -53.6 NC_005342.2 + 19238 0.68 0.706899
Target:  5'- --aUACGGgcuggaCGUGACGAACaugcacgcauccgGCGACCu -3'
miRNA:   3'- gaaGUGCCa-----GCACUGCUUG-------------CGCUGGc -5'
26026 3' -53.6 NC_005342.2 + 19613 0.83 0.102652
Target:  5'- -gUCACGGcgagCGcGGCGAGCGCGGCCGa -3'
miRNA:   3'- gaAGUGCCa---GCaCUGCUUGCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 19731 0.67 0.738896
Target:  5'- -gUCACGGUcacCGUGACGcgcccgGACGCGcaaggcaACCa -3'
miRNA:   3'- gaAGUGCCA---GCACUGC------UUGCGC-------UGGc -5'
26026 3' -53.6 NC_005342.2 + 20154 0.71 0.543789
Target:  5'- gCUUCGUGGUCGacuacucGGCGGACaCGACCGa -3'
miRNA:   3'- -GAAGUGCCAGCa------CUGCUUGcGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 20212 0.67 0.770933
Target:  5'- -cUCGCGcuuUCGUGGCGGcgaucgacCGCGACUGg -3'
miRNA:   3'- gaAGUGCc--AGCACUGCUu-------GCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 20457 0.66 0.816759
Target:  5'- --gCGcCGGUCGUGACGcAGCcgguuagcgucccgGCGGCUGc -3'
miRNA:   3'- gaaGU-GCCAGCACUGC-UUG--------------CGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 22405 0.66 0.81018
Target:  5'- gCUUCGCGG-CGc-AUGAGCGC-ACCGa -3'
miRNA:   3'- -GAAGUGCCaGCacUGCUUGCGcUGGC- -5'
26026 3' -53.6 NC_005342.2 + 22857 0.67 0.750401
Target:  5'- -gUCGCGG-CccGGCGAucgGCGCGAUCGu -3'
miRNA:   3'- gaAGUGCCaGcaCUGCU---UGCGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.