miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26026 3' -53.6 NC_005342.2 + 29667 0.7 0.565404
Target:  5'- --gCGCGaGaagcgCGUGcCGAGCGCGGCCGc -3'
miRNA:   3'- gaaGUGC-Ca----GCACuGCUUGCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 30938 0.68 0.697156
Target:  5'- -gUCAugcCGGUCGcGACGGccGCGCGGCg- -3'
miRNA:   3'- gaAGU---GCCAGCaCUGCU--UGCGCUGgc -5'
26026 3' -53.6 NC_005342.2 + 10697 0.68 0.707978
Target:  5'- aUUgACGGUCGUuuucccgacuGGCGGcguaucguaccGCGCGGCCc -3'
miRNA:   3'- gAAgUGCCAGCA----------CUGCU-----------UGCGCUGGc -5'
26026 3' -53.6 NC_005342.2 + 9263 0.66 0.820475
Target:  5'- gCUUCACGGUCGgguuuucacCGCcGGCCGg -3'
miRNA:   3'- -GAAGUGCCAGCacugcuu--GCG-CUGGC- -5'
26026 3' -53.6 NC_005342.2 + 38295 0.7 0.591624
Target:  5'- gUUCGCGGgcaUCGUGAagcgccagcuacagcCGGGCGCG-CCGc -3'
miRNA:   3'- gAAGUGCC---AGCACU---------------GCUUGCGCuGGC- -5'
26026 3' -53.6 NC_005342.2 + 11842 0.69 0.60922
Target:  5'- -gUCugcCGGUCGgccgaGACGGGCGCGAgCa -3'
miRNA:   3'- gaAGu--GCCAGCa----CUGCUUGCGCUgGc -5'
26026 3' -53.6 NC_005342.2 + 19613 0.83 0.102652
Target:  5'- -gUCACGGcgagCGcGGCGAGCGCGGCCGa -3'
miRNA:   3'- gaAGUGCCa---GCaCUGCUUGCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 28231 0.73 0.431169
Target:  5'- -gUCACGGUgacCGUGACGcgcACGCGGCg- -3'
miRNA:   3'- gaAGUGCCA---GCACUGCu--UGCGCUGgc -5'
26026 3' -53.6 NC_005342.2 + 37157 0.72 0.480815
Target:  5'- ---uGCGG-CGUGACGAACgGCG-CCGa -3'
miRNA:   3'- gaagUGCCaGCACUGCUUG-CGCuGGC- -5'
26026 3' -53.6 NC_005342.2 + 35831 0.68 0.675334
Target:  5'- --aCGCaaGGUUGgcGACGGccuGCGCGACCGg -3'
miRNA:   3'- gaaGUG--CCAGCa-CUGCU---UGCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 27078 0.69 0.639009
Target:  5'- uUUCGCGGaUCaguuUGACGAucauccauuccugcGCGCGACCc -3'
miRNA:   3'- gAAGUGCC-AGc---ACUGCU--------------UGCGCUGGc -5'
26026 3' -53.6 NC_005342.2 + 31491 0.69 0.631283
Target:  5'- -cUCGCGuGUCGUG-CGAcAUGCGcCCGa -3'
miRNA:   3'- gaAGUGC-CAGCACuGCU-UGCGCuGGC- -5'
26026 3' -53.6 NC_005342.2 + 23227 0.7 0.565404
Target:  5'- -aUCACGG-CG--GCGAACGCG-CCGg -3'
miRNA:   3'- gaAGUGCCaGCacUGCUUGCGCuGGC- -5'
26026 3' -53.6 NC_005342.2 + 29587 0.69 0.653348
Target:  5'- --gCGCGGuagUCGUcGGCGAagcgcuGCGCGAUCGg -3'
miRNA:   3'- gaaGUGCC---AGCA-CUGCU------UGCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 28684 0.7 0.576297
Target:  5'- --aCGCGGUCGaacGCGGcaaucagcuGCGCGGCCGc -3'
miRNA:   3'- gaaGUGCCAGCac-UGCU---------UGCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 11941 0.69 0.631283
Target:  5'- cCUUgCACGcagCGUcGACGAuCGCGGCCGu -3'
miRNA:   3'- -GAA-GUGCca-GCA-CUGCUuGCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 32027 0.68 0.675334
Target:  5'- -gUCAgcaGGUCGgucACGAGCGCGugCa -3'
miRNA:   3'- gaAGUg--CCAGCac-UGCUUGCGCugGc -5'
26026 3' -53.6 NC_005342.2 + 19238 0.68 0.706899
Target:  5'- --aUACGGgcuggaCGUGACGAACaugcacgcauccgGCGACCu -3'
miRNA:   3'- gaaGUGCCa-----GCACUGCUUG-------------CGCUGGc -5'
26026 3' -53.6 NC_005342.2 + 15584 0.7 0.587237
Target:  5'- -gUCACGGUUucGGCGAACGuCGuGCCGu -3'
miRNA:   3'- gaAGUGCCAGcaCUGCUUGC-GC-UGGC- -5'
26026 3' -53.6 NC_005342.2 + 40569 0.69 0.631283
Target:  5'- cCUUC-UGGUCGccGGCGAuggucGCGCGACuCGg -3'
miRNA:   3'- -GAAGuGCCAGCa-CUGCU-----UGCGCUG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.