Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26027 | 3' | -55.5 | NC_005342.2 | + | 44312 | 1.1 | 0.00065 |
Target: 5'- gCUCAGACCGUCGCGAACGAGCUGCACa -3' miRNA: 3'- -GAGUCUGGCAGCGCUUGCUCGACGUG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 41352 | 0.74 | 0.259372 |
Target: 5'- -gCAGAUUGUCGgGcGCGGGCUGCGg -3' miRNA: 3'- gaGUCUGGCAGCgCuUGCUCGACGUg -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 38158 | 0.72 | 0.302287 |
Target: 5'- gCUCAGGC-GaCGCGGACGGGCagGCAUa -3' miRNA: 3'- -GAGUCUGgCaGCGCUUGCUCGa-CGUG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 41172 | 0.71 | 0.350468 |
Target: 5'- gUCGG-CCGUCGUGAuccaugGCGAGCUcgagaagucggaGCGCg -3' miRNA: 3'- gAGUCuGGCAGCGCU------UGCUCGA------------CGUG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 38800 | 0.71 | 0.35815 |
Target: 5'- -aCAcuGCCGUCGCGAACGAacgcaagcgcgcaGCUGCGg -3' miRNA: 3'- gaGUc-UGGCAGCGCUUGCU-------------CGACGUg -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 40148 | 0.71 | 0.376528 |
Target: 5'- -gCAGGCCGcgucgaucUgGCGAGCGAGCUGaACu -3' miRNA: 3'- gaGUCUGGC--------AgCGCUUGCUCGACgUG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 24209 | 0.7 | 0.403863 |
Target: 5'- ---cGACuCGUCGCGuguCGAGCUGCcCg -3' miRNA: 3'- gaguCUG-GCAGCGCuu-GCUCGACGuG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 13852 | 0.7 | 0.403863 |
Target: 5'- -cCGcGCCG-CGCGAagucggccggcACGGGCUGCGCg -3' miRNA: 3'- gaGUcUGGCaGCGCU-----------UGCUCGACGUG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 31067 | 0.7 | 0.422769 |
Target: 5'- aUCAGACCGcUGcCGAGCGAcgcaGCcGCGCg -3' miRNA: 3'- gAGUCUGGCaGC-GCUUGCU----CGaCGUG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 35637 | 0.7 | 0.43242 |
Target: 5'- ---cGACCGUCGCGAACGugaaUGCGa -3' miRNA: 3'- gaguCUGGCAGCGCUUGCucg-ACGUg -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 10681 | 0.7 | 0.442197 |
Target: 5'- -gUAGACCaaCGCGucgGCGAGCUGaCGCa -3' miRNA: 3'- gaGUCUGGcaGCGCu--UGCUCGAC-GUG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 35603 | 0.7 | 0.442197 |
Target: 5'- -cCGGGCgGggCGCGGGCGGGCgcuacgGCGCc -3' miRNA: 3'- gaGUCUGgCa-GCGCUUGCUCGa-----CGUG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 7776 | 0.69 | 0.46212 |
Target: 5'- -cCAGGCCGagCGCGGACGAGUaGUuCa -3' miRNA: 3'- gaGUCUGGCa-GCGCUUGCUCGaCGuG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 35199 | 0.69 | 0.46212 |
Target: 5'- -aCGGGCCGgugagCGUGccgccuGCGAGCgGCACg -3' miRNA: 3'- gaGUCUGGCa----GCGCu-----UGCUCGaCGUG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 20622 | 0.69 | 0.469204 |
Target: 5'- gUCGGGCCaauucgacgcgagcGUCGC-AACGGcGCUGCGCc -3' miRNA: 3'- gAGUCUGG--------------CAGCGcUUGCU-CGACGUG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 39398 | 0.69 | 0.472257 |
Target: 5'- gCUCAGAUCGUCGCGuauCuGGCUGa-- -3' miRNA: 3'- -GAGUCUGGCAGCGCuu-GcUCGACgug -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 10565 | 0.69 | 0.482505 |
Target: 5'- -cCGGGCCGgcCGaCGAGCGGGUcggGCGCg -3' miRNA: 3'- gaGUCUGGCa-GC-GCUUGCUCGa--CGUG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 25466 | 0.69 | 0.482505 |
Target: 5'- -cCGGaAUCGUCGCGGcgacugcCGGGUUGCGCg -3' miRNA: 3'- gaGUC-UGGCAGCGCUu------GCUCGACGUG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 46029 | 0.69 | 0.503314 |
Target: 5'- aCUCGcGACuCGUCGaagaucgacUGAACGAGCggGCGCc -3' miRNA: 3'- -GAGU-CUG-GCAGC---------GCUUGCUCGa-CGUG- -5' |
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26027 | 3' | -55.5 | NC_005342.2 | + | 3659 | 0.69 | 0.503314 |
Target: 5'- gUCuGAgCCGUCGCGu-CGuAGCUGCGg -3' miRNA: 3'- gAGuCU-GGCAGCGCuuGC-UCGACGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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