miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26027 3' -55.5 NC_005342.2 + 1103 0.68 0.535227
Target:  5'- gUCGGuGCCGUgcUGCGcGCGAcGUUGCACu -3'
miRNA:   3'- gAGUC-UGGCA--GCGCuUGCU-CGACGUG- -5'
26027 3' -55.5 NC_005342.2 + 2651 0.66 0.634208
Target:  5'- aUCAcGAUC-UCGCGAcCGGGCUGguCg -3'
miRNA:   3'- gAGU-CUGGcAGCGCUuGCUCGACguG- -5'
26027 3' -55.5 NC_005342.2 + 2963 0.66 0.656424
Target:  5'- uUCGGGaCGUCGUucGCGAGCcaagGCGCc -3'
miRNA:   3'- gAGUCUgGCAGCGcuUGCUCGa---CGUG- -5'
26027 3' -55.5 NC_005342.2 + 3659 0.69 0.503314
Target:  5'- gUCuGAgCCGUCGCGu-CGuAGCUGCGg -3'
miRNA:   3'- gAGuCU-GGCAGCGCuuGC-UCGACGUg -5'
26027 3' -55.5 NC_005342.2 + 5542 0.67 0.567821
Target:  5'- -gCAGACCGUucagcucgauugUGCGGccauCGGGCaUGCGCa -3'
miRNA:   3'- gaGUCUGGCA------------GCGCUu---GCUCG-ACGUG- -5'
26027 3' -55.5 NC_005342.2 + 7776 0.69 0.46212
Target:  5'- -cCAGGCCGagCGCGGACGAGUaGUuCa -3'
miRNA:   3'- gaGUCUGGCa-GCGCUUGCUCGaCGuG- -5'
26027 3' -55.5 NC_005342.2 + 10565 0.69 0.482505
Target:  5'- -cCGGGCCGgcCGaCGAGCGGGUcggGCGCg -3'
miRNA:   3'- gaGUCUGGCa-GC-GCUUGCUCGa--CGUG- -5'
26027 3' -55.5 NC_005342.2 + 10681 0.7 0.442197
Target:  5'- -gUAGACCaaCGCGucgGCGAGCUGaCGCa -3'
miRNA:   3'- gaGUCUGGcaGCGCu--UGCUCGAC-GUG- -5'
26027 3' -55.5 NC_005342.2 + 11048 0.66 0.644211
Target:  5'- aCUCGGcaccggcGCgCGUCGUGAGCGGcgugucgccgcGCUGCGg -3'
miRNA:   3'- -GAGUC-------UG-GCAGCGCUUGCU-----------CGACGUg -5'
26027 3' -55.5 NC_005342.2 + 12125 0.67 0.58983
Target:  5'- -gCAGGCCGUCGCcaaccuuGCGuacguGGCUGgCGCg -3'
miRNA:   3'- gaGUCUGGCAGCGcu-----UGC-----UCGAC-GUG- -5'
26027 3' -55.5 NC_005342.2 + 13852 0.7 0.403863
Target:  5'- -cCGcGCCG-CGCGAagucggccggcACGGGCUGCGCg -3'
miRNA:   3'- gaGUcUGGCaGCGCU-----------UGCUCGACGUG- -5'
26027 3' -55.5 NC_005342.2 + 13889 0.68 0.535227
Target:  5'- ---cGGCCGUCGCGAuCGuAGCcGCAg -3'
miRNA:   3'- gaguCUGGCAGCGCUuGC-UCGaCGUg -5'
26027 3' -55.5 NC_005342.2 + 13938 0.68 0.524505
Target:  5'- uUCGGGCCGgcggccggUGCGcGCGAGCUGaguGCc -3'
miRNA:   3'- gAGUCUGGCa-------GCGCuUGCUCGACg--UG- -5'
26027 3' -55.5 NC_005342.2 + 15818 0.68 0.535227
Target:  5'- --gAGACacUCGUcAGCGAGCUGCGCg -3'
miRNA:   3'- gagUCUGgcAGCGcUUGCUCGACGUG- -5'
26027 3' -55.5 NC_005342.2 + 17315 0.66 0.667504
Target:  5'- -aCGuGAUCGUUGCGAugaagGCGAGCgucgacGCGCu -3'
miRNA:   3'- gaGU-CUGGCAGCGCU-----UGCUCGa-----CGUG- -5'
26027 3' -55.5 NC_005342.2 + 18500 0.68 0.552538
Target:  5'- -cCAGAgCGgcgugcagaacuaCGCGAGCGGGCaGCGCu -3'
miRNA:   3'- gaGUCUgGCa------------GCGCUUGCUCGaCGUG- -5'
26027 3' -55.5 NC_005342.2 + 20622 0.69 0.469204
Target:  5'- gUCGGGCCaauucgacgcgagcGUCGC-AACGGcGCUGCGCc -3'
miRNA:   3'- gAGUCUGG--------------CAGCGcUUGCU-CGACGUG- -5'
26027 3' -55.5 NC_005342.2 + 20743 0.67 0.58983
Target:  5'- -cCGGACa-UCGCcGACGcGGCUGCGCg -3'
miRNA:   3'- gaGUCUGgcAGCGcUUGC-UCGACGUG- -5'
26027 3' -55.5 NC_005342.2 + 22824 0.67 0.58983
Target:  5'- aUCGGGCagGcCGCGAACGuGC-GCGCc -3'
miRNA:   3'- gAGUCUGg-CaGCGCUUGCuCGaCGUG- -5'
26027 3' -55.5 NC_005342.2 + 24209 0.7 0.403863
Target:  5'- ---cGACuCGUCGCGuguCGAGCUGCcCg -3'
miRNA:   3'- gaguCUG-GCAGCGCuu-GCUCGACGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.