miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26027 3' -55.5 NC_005342.2 + 41352 0.74 0.259372
Target:  5'- -gCAGAUUGUCGgGcGCGGGCUGCGg -3'
miRNA:   3'- gaGUCUGGCAGCgCuUGCUCGACGUg -5'
26027 3' -55.5 NC_005342.2 + 20743 0.67 0.58983
Target:  5'- -cCGGACa-UCGCcGACGcGGCUGCGCg -3'
miRNA:   3'- gaGUCUGgcAGCGcUUGC-UCGACGUG- -5'
26027 3' -55.5 NC_005342.2 + 26468 0.67 0.611983
Target:  5'- --uGGAUCGUCGUGAaugugcgucGCGuGCcGCACg -3'
miRNA:   3'- gagUCUGGCAGCGCU---------UGCuCGaCGUG- -5'
26027 3' -55.5 NC_005342.2 + 28722 0.66 0.682955
Target:  5'- aUCGgcguGugCGUCGCGugcggccagcacgauGACGAGCgcgaGCACu -3'
miRNA:   3'- gAGU----CugGCAGCGC---------------UUGCUCGa---CGUG- -5'
26027 3' -55.5 NC_005342.2 + 7776 0.69 0.46212
Target:  5'- -cCAGGCCGagCGCGGACGAGUaGUuCa -3'
miRNA:   3'- gaGUCUGGCa-GCGCUUGCUCGaCGuG- -5'
26027 3' -55.5 NC_005342.2 + 35199 0.69 0.46212
Target:  5'- -aCGGGCCGgugagCGUGccgccuGCGAGCgGCACg -3'
miRNA:   3'- gaGUCUGGCa----GCGCu-----UGCUCGaCGUG- -5'
26027 3' -55.5 NC_005342.2 + 25466 0.69 0.482505
Target:  5'- -cCGGaAUCGUCGCGGcgacugcCGGGUUGCGCg -3'
miRNA:   3'- gaGUC-UGGCAGCGCUu------GCUCGACGUG- -5'
26027 3' -55.5 NC_005342.2 + 3659 0.69 0.503314
Target:  5'- gUCuGAgCCGUCGCGu-CGuAGCUGCGg -3'
miRNA:   3'- gAGuCU-GGCAGCGCuuGC-UCGACGUg -5'
26027 3' -55.5 NC_005342.2 + 13938 0.68 0.524505
Target:  5'- uUCGGGCCGgcggccggUGCGcGCGAGCUGaguGCc -3'
miRNA:   3'- gAGUCUGGCa-------GCGCuUGCUCGACg--UG- -5'
26027 3' -55.5 NC_005342.2 + 1103 0.68 0.535227
Target:  5'- gUCGGuGCCGUgcUGCGcGCGAcGUUGCACu -3'
miRNA:   3'- gAGUC-UGGCA--GCGCuUGCU-CGACGUG- -5'
26027 3' -55.5 NC_005342.2 + 39519 0.68 0.524505
Target:  5'- gCUguGGCCGUC-CGAACGcgcauacccGGCUGC-Cg -3'
miRNA:   3'- -GAguCUGGCAGcGCUUGC---------UCGACGuG- -5'
26027 3' -55.5 NC_005342.2 + 41172 0.71 0.350468
Target:  5'- gUCGG-CCGUCGUGAuccaugGCGAGCUcgagaagucggaGCGCg -3'
miRNA:   3'- gAGUCuGGCAGCGCU------UGCUCGA------------CGUG- -5'
26027 3' -55.5 NC_005342.2 + 5542 0.67 0.567821
Target:  5'- -gCAGACCGUucagcucgauugUGCGGccauCGGGCaUGCGCa -3'
miRNA:   3'- gaGUCUGGCA------------GCGCUu---GCUCG-ACGUG- -5'
26027 3' -55.5 NC_005342.2 + 13852 0.7 0.403863
Target:  5'- -cCGcGCCG-CGCGAagucggccggcACGGGCUGCGCg -3'
miRNA:   3'- gaGUcUGGCaGCGCU-----------UGCUCGACGUG- -5'
26027 3' -55.5 NC_005342.2 + 46029 0.69 0.503314
Target:  5'- aCUCGcGACuCGUCGaagaucgacUGAACGAGCggGCGCc -3'
miRNA:   3'- -GAGU-CUG-GCAGC---------GCUUGCUCGa-CGUG- -5'
26027 3' -55.5 NC_005342.2 + 30819 0.67 0.578803
Target:  5'- --uGGcCCGUCaGCGGcGCGAGCUGCuGCu -3'
miRNA:   3'- gagUCuGGCAG-CGCU-UGCUCGACG-UG- -5'
26027 3' -55.5 NC_005342.2 + 47355 0.67 0.623092
Target:  5'- uUCAGcuGCgCGUCGCcgaGAUGGGCgGCACg -3'
miRNA:   3'- gAGUC--UG-GCAGCGc--UUGCUCGaCGUG- -5'
26027 3' -55.5 NC_005342.2 + 31067 0.7 0.422769
Target:  5'- aUCAGACCGcUGcCGAGCGAcgcaGCcGCGCg -3'
miRNA:   3'- gAGUCUGGCaGC-GCUUGCU----CGaCGUG- -5'
26027 3' -55.5 NC_005342.2 + 20622 0.69 0.469204
Target:  5'- gUCGGGCCaauucgacgcgagcGUCGC-AACGGcGCUGCGCc -3'
miRNA:   3'- gAGUCUGG--------------CAGCGcUUGCU-CGACGUG- -5'
26027 3' -55.5 NC_005342.2 + 13889 0.68 0.535227
Target:  5'- ---cGGCCGUCGCGAuCGuAGCcGCAg -3'
miRNA:   3'- gaguCUGGCAGCGCUuGC-UCGaCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.