miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26028 5' -58.5 NC_005342.2 + 14352 0.69 0.335282
Target:  5'- uCAGGuCGGCGaucGCCUGCgCGGUCGc -3'
miRNA:   3'- -GUCUuGCCGCgguUGGACG-GCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 33256 0.69 0.351489
Target:  5'- uCAGAuCGGCuacaaucCCGACCUGCCGcUUGGc -3'
miRNA:   3'- -GUCUuGCCGc------GGUUGGACGGCcAGCC- -5'
26028 5' -58.5 NC_005342.2 + 37378 0.69 0.359798
Target:  5'- -cGAGCGcGCGcCCGACCcGCUcGUCGGc -3'
miRNA:   3'- guCUUGC-CGC-GGUUGGaCGGcCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 2365 0.69 0.368244
Target:  5'- cCAuGACGGCGCCGGCggucGCCuGGUCGc -3'
miRNA:   3'- -GUcUUGCCGCGGUUGga--CGG-CCAGCc -5'
26028 5' -58.5 NC_005342.2 + 27446 0.68 0.394386
Target:  5'- -cGAACGGCGCggCGGCg-GCCGGcagCGGu -3'
miRNA:   3'- guCUUGCCGCG--GUUGgaCGGCCa--GCC- -5'
26028 5' -58.5 NC_005342.2 + 7280 0.68 0.403362
Target:  5'- aAGAucACGGCGCCccacguGCCUGCCGacuucuucuGaCGGa -3'
miRNA:   3'- gUCU--UGCCGCGGu-----UGGACGGC---------CaGCC- -5'
26028 5' -58.5 NC_005342.2 + 33107 0.68 0.403362
Target:  5'- gUAGAACGGCGau-GCCUG-CGGcgCGGc -3'
miRNA:   3'- -GUCUUGCCGCgguUGGACgGCCa-GCC- -5'
26028 5' -58.5 NC_005342.2 + 29543 0.68 0.403362
Target:  5'- -cGAuCGGCGC--GCC-GCCGGUCGa -3'
miRNA:   3'- guCUuGCCGCGguUGGaCGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 2727 0.68 0.403362
Target:  5'- gAGAuuGCGGcCGCCG---UGCCGGUCGc -3'
miRNA:   3'- gUCU--UGCC-GCGGUuggACGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 31680 0.68 0.421699
Target:  5'- -uGAACa-CGCCGAagccgcCCUGCuCGGUCGGa -3'
miRNA:   3'- guCUUGccGCGGUU------GGACG-GCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 29740 0.68 0.431053
Target:  5'- uCGGGAuCGGacaucaggaaGUCGAUCUGCUGGUCGa -3'
miRNA:   3'- -GUCUU-GCCg---------CGGUUGGACGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 17944 0.67 0.440528
Target:  5'- gCAGGugcgACGGCgGCCAGCC-GCC-GUCGa -3'
miRNA:   3'- -GUCU----UGCCG-CGGUUGGaCGGcCAGCc -5'
26028 5' -58.5 NC_005342.2 + 4946 0.67 0.440528
Target:  5'- uCGGcACGaGCGCaUAGCCgGCCGGgaUCGGc -3'
miRNA:   3'- -GUCuUGC-CGCG-GUUGGaCGGCC--AGCC- -5'
26028 5' -58.5 NC_005342.2 + 8622 0.67 0.440528
Target:  5'- uCGGcGCGGCGcCCGGCUUGCuCGugacggugccGUCGGc -3'
miRNA:   3'- -GUCuUGCCGC-GGUUGGACG-GC----------CAGCC- -5'
26028 5' -58.5 NC_005342.2 + 45292 0.67 0.479563
Target:  5'- ---cAUGGCGCuCGACCaGCCcGGUCGc -3'
miRNA:   3'- gucuUGCCGCG-GUUGGaCGG-CCAGCc -5'
26028 5' -58.5 NC_005342.2 + 40864 0.67 0.489587
Target:  5'- uGGAACaguuuGCGCugcgauugCAugCUGCCGGUCuGGa -3'
miRNA:   3'- gUCUUGc----CGCG--------GUugGACGGCCAG-CC- -5'
26028 5' -58.5 NC_005342.2 + 4039 0.67 0.489587
Target:  5'- aCAGGuCGGCGgUcGCCaUGCCGGgcagcCGGa -3'
miRNA:   3'- -GUCUuGCCGCgGuUGG-ACGGCCa----GCC- -5'
26028 5' -58.5 NC_005342.2 + 28478 0.67 0.489587
Target:  5'- -cGAGCGccGCGUCGACCgcGCgGGUCGcGg -3'
miRNA:   3'- guCUUGC--CGCGGUUGGa-CGgCCAGC-C- -5'
26028 5' -58.5 NC_005342.2 + 27277 0.66 0.499707
Target:  5'- -uGAACGGuCGCC-ACgaGCCGG-CGa -3'
miRNA:   3'- guCUUGCC-GCGGuUGgaCGGCCaGCc -5'
26028 5' -58.5 NC_005342.2 + 30214 0.66 0.499707
Target:  5'- -cGAGCGuGCgGCCGACCaggcUGCCGGcCa- -3'
miRNA:   3'- guCUUGC-CG-CGGUUGG----ACGGCCaGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.