miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26028 5' -58.5 NC_005342.2 + 46414 0.7 0.327386
Target:  5'- --uGGCGGCGCgcuacaaaAAgCUGCCGGUCGa -3'
miRNA:   3'- gucUUGCCGCGg-------UUgGACGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 45691 0.73 0.203156
Target:  5'- cCGGccACGGCGCaCGACCUGCCGa-CGGc -3'
miRNA:   3'- -GUCu-UGCCGCG-GUUGGACGGCcaGCC- -5'
26028 5' -58.5 NC_005342.2 + 45292 0.67 0.479563
Target:  5'- ---cAUGGCGCuCGACCaGCCcGGUCGc -3'
miRNA:   3'- gucuUGCCGCG-GUUGGaCGG-CCAGCc -5'
26028 5' -58.5 NC_005342.2 + 44952 0.7 0.297187
Target:  5'- ----uCGGUGCCGACCUGuCCGGcaUCGa -3'
miRNA:   3'- gucuuGCCGCGGUUGGAC-GGCC--AGCc -5'
26028 5' -58.5 NC_005342.2 + 44775 0.66 0.530595
Target:  5'- -cGGGCGGCGC--GCCggGCCGGcucacCGGc -3'
miRNA:   3'- guCUUGCCGCGguUGGa-CGGCCa----GCC- -5'
26028 5' -58.5 NC_005342.2 + 44039 1.09 0.000479
Target:  5'- gCAGAACGGCGCCAACCUGCCGGUCGGc -3'
miRNA:   3'- -GUCUUGCCGCGGUUGGACGGCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 43320 0.72 0.214019
Target:  5'- aAGAccCGcGCGCCGGCCUGCCcGUCGc -3'
miRNA:   3'- gUCUu-GC-CGCGGUUGGACGGcCAGCc -5'
26028 5' -58.5 NC_005342.2 + 41537 0.72 0.225377
Target:  5'- aCGGcacGACGGCGcCCGGCC-GCgagCGGUCGGg -3'
miRNA:   3'- -GUC---UUGCCGC-GGUUGGaCG---GCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 40864 0.67 0.489587
Target:  5'- uGGAACaguuuGCGCugcgauugCAugCUGCCGGUCuGGa -3'
miRNA:   3'- gUCUUGc----CGCG--------GUugGACGGCCAG-CC- -5'
26028 5' -58.5 NC_005342.2 + 38926 0.7 0.327386
Target:  5'- gCAGAuCGGCGUCGACgUGUCgcaGGUCGc -3'
miRNA:   3'- -GUCUuGCCGCGGUUGgACGG---CCAGCc -5'
26028 5' -58.5 NC_005342.2 + 37378 0.69 0.359798
Target:  5'- -cGAGCGcGCGcCCGACCcGCUcGUCGGc -3'
miRNA:   3'- guCUUGC-CGC-GGUUGGaCGGcCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 37167 0.69 0.335282
Target:  5'- -cGAACGGCGCCGACauuCCGG-CGc -3'
miRNA:   3'- guCUUGCCGCGGUUGgacGGCCaGCc -5'
26028 5' -58.5 NC_005342.2 + 33256 0.69 0.351489
Target:  5'- uCAGAuCGGCuacaaucCCGACCUGCCGcUUGGc -3'
miRNA:   3'- -GUCUuGCCGc------GGUUGGACGGCcAGCC- -5'
26028 5' -58.5 NC_005342.2 + 33107 0.68 0.403362
Target:  5'- gUAGAACGGCGau-GCCUG-CGGcgCGGc -3'
miRNA:   3'- -GUCUUGCCGCgguUGGACgGCCa-GCC- -5'
26028 5' -58.5 NC_005342.2 + 32542 0.66 0.545249
Target:  5'- aGGAACGccacgugcaacaugaGCG-CGGCCUGCuCGaGUCGGu -3'
miRNA:   3'- gUCUUGC---------------CGCgGUUGGACG-GC-CAGCC- -5'
26028 5' -58.5 NC_005342.2 + 31680 0.68 0.421699
Target:  5'- -uGAACa-CGCCGAagccgcCCUGCuCGGUCGGa -3'
miRNA:   3'- guCUUGccGCGGUU------GGACG-GCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 30214 0.66 0.499707
Target:  5'- -cGAGCGuGCgGCCGACCaggcUGCCGGcCa- -3'
miRNA:   3'- guCUUGC-CG-CGGUUGG----ACGGCCaGcc -5'
26028 5' -58.5 NC_005342.2 + 29740 0.68 0.431053
Target:  5'- uCGGGAuCGGacaucaggaaGUCGAUCUGCUGGUCGa -3'
miRNA:   3'- -GUCUU-GCCg---------CGGUUGGACGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 29636 0.66 0.514028
Target:  5'- uGGAACGGCGUgAggaucgugcgcacgcGCgUGCCGG-CGa -3'
miRNA:   3'- gUCUUGCCGCGgU---------------UGgACGGCCaGCc -5'
26028 5' -58.5 NC_005342.2 + 29543 0.68 0.403362
Target:  5'- -cGAuCGGCGC--GCC-GCCGGUCGa -3'
miRNA:   3'- guCUuGCCGCGguUGGaCGGCCAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.