Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26030 | 3' | -53 | NC_005342.2 | + | 43286 | 1.11 | 0.001 |
Target: 5'- gGCAAGAAGCUCGCCGAUGGCACGAUCc -3' miRNA: 3'- -CGUUCUUCGAGCGGCUACCGUGCUAG- -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 36031 | 0.75 | 0.315416 |
Target: 5'- uGCAAGgcGCUCGaCCGccuggagcgcgcguaAUGGCGCGcgCg -3' miRNA: 3'- -CGUUCuuCGAGC-GGC---------------UACCGUGCuaG- -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 30113 | 0.74 | 0.320246 |
Target: 5'- gGCcAGAuucgaacuGGCacgCGCCGAUGGCGCGAc- -3' miRNA: 3'- -CGuUCU--------UCGa--GCGGCUACCGUGCUag -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 18972 | 0.73 | 0.368878 |
Target: 5'- cGCGAGAAGCUgaucugcgaugCGCUGAcaaaagcagguuucUGGCGCGAc- -3' miRNA: 3'- -CGUUCUUCGA-----------GCGGCU--------------ACCGUGCUag -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 33578 | 0.73 | 0.39926 |
Target: 5'- cGCGAGAAaCUCGCCuucAUGGCgaccgcgcagGCGAUCg -3' miRNA: 3'- -CGUUCUUcGAGCGGc--UACCG----------UGCUAG- -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 36610 | 0.73 | 0.408777 |
Target: 5'- uGCAAGAaaAGCUCGUCGAgcgcGGCAaGGUg -3' miRNA: 3'- -CGUUCU--UCGAGCGGCUa---CCGUgCUAg -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 29668 | 0.72 | 0.418435 |
Target: 5'- cGCGAGAAGCgcgUGCCGA--GCGCGGc- -3' miRNA: 3'- -CGUUCUUCGa--GCGGCUacCGUGCUag -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 22954 | 0.72 | 0.418435 |
Target: 5'- cGCAAGcuGUUCGCCGccGGCAgcgucgcgguacCGGUCg -3' miRNA: 3'- -CGUUCuuCGAGCGGCuaCCGU------------GCUAG- -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 19538 | 0.71 | 0.47914 |
Target: 5'- cGCAAGcuGaugggCGCCGGUcGCACGGUCg -3' miRNA: 3'- -CGUUCuuCga---GCGGCUAcCGUGCUAG- -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 47274 | 0.71 | 0.489679 |
Target: 5'- cCAcGgcGCUCGCgggCGgcGGCACGAUCg -3' miRNA: 3'- cGUuCuuCGAGCG---GCuaCCGUGCUAG- -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 32427 | 0.71 | 0.500325 |
Target: 5'- uUAAGGAGCUCGCCacGAUGGgGCuGcUCg -3' miRNA: 3'- cGUUCUUCGAGCGG--CUACCgUG-CuAG- -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 28013 | 0.71 | 0.511071 |
Target: 5'- aGCAcucgacGGcGGCUCGCCGcccGGCGCGcUCg -3' miRNA: 3'- -CGU------UCuUCGAGCGGCua-CCGUGCuAG- -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 13203 | 0.7 | 0.531745 |
Target: 5'- cGCAGGAcAGCgcgucaCGCCGAUgguguucGGCGCGAc- -3' miRNA: 3'- -CGUUCU-UCGa-----GCGGCUA-------CCGUGCUag -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 42704 | 0.7 | 0.566085 |
Target: 5'- aGCGGGcGGCgcucUCGaCCGAUGGCuauuucgucuACGAUCc -3' miRNA: 3'- -CGUUCuUCG----AGC-GGCUACCG----------UGCUAG- -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 13141 | 0.69 | 0.599837 |
Target: 5'- gGCuu-GAGCaugUCGCCGAccgGGCGCGAUa -3' miRNA: 3'- -CGuucUUCG---AGCGGCUa--CCGUGCUAg -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 20666 | 0.69 | 0.599837 |
Target: 5'- gGCAGGAGGCgcacgggaugaCGCCGgAUGGCguguACgGAUCg -3' miRNA: 3'- -CGUUCUUCGa----------GCGGC-UACCG----UG-CUAG- -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 3298 | 0.69 | 0.599837 |
Target: 5'- cGCAGGAuAGCU-GCCGAcuucuucGGCGCGcgCg -3' miRNA: 3'- -CGUUCU-UCGAgCGGCUa------CCGUGCuaG- -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 641 | 0.69 | 0.633851 |
Target: 5'- cGCAAGGcacgguAGUgcccgUGCuCGGUGaGCGCGAUCg -3' miRNA: 3'- -CGUUCU------UCGa----GCG-GCUAC-CGUGCUAG- -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 26125 | 0.68 | 0.655404 |
Target: 5'- aGCAGGAcgAGCUcCGUgugcgugCGAUGGUACGuuuUCa -3' miRNA: 3'- -CGUUCU--UCGA-GCG-------GCUACCGUGCu--AG- -5' |
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26030 | 3' | -53 | NC_005342.2 | + | 10327 | 0.68 | 0.656536 |
Target: 5'- cGCAGGcaguuuGGCgUCGCCGAgaGCGCGaAUCg -3' miRNA: 3'- -CGUUCu-----UCG-AGCGGCUacCGUGC-UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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