miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26030 3' -53 NC_005342.2 + 18972 0.73 0.368878
Target:  5'- cGCGAGAAGCUgaucugcgaugCGCUGAcaaaagcagguuucUGGCGCGAc- -3'
miRNA:   3'- -CGUUCUUCGA-----------GCGGCU--------------ACCGUGCUag -5'
26030 3' -53 NC_005342.2 + 30714 0.67 0.745357
Target:  5'- uGCGGGcuGCUCGCaCGAUaGGUGCGcugCa -3'
miRNA:   3'- -CGUUCuuCGAGCG-GCUA-CCGUGCua-G- -5'
26030 3' -53 NC_005342.2 + 26125 0.68 0.655404
Target:  5'- aGCAGGAcgAGCUcCGUgugcgugCGAUGGUACGuuuUCa -3'
miRNA:   3'- -CGUUCU--UCGA-GCG-------GCUACCGUGCu--AG- -5'
26030 3' -53 NC_005342.2 + 641 0.69 0.633851
Target:  5'- cGCAAGGcacgguAGUgcccgUGCuCGGUGaGCGCGAUCg -3'
miRNA:   3'- -CGUUCU------UCGa----GCG-GCUAC-CGUGCUAG- -5'
26030 3' -53 NC_005342.2 + 13141 0.69 0.599837
Target:  5'- gGCuu-GAGCaugUCGCCGAccgGGCGCGAUa -3'
miRNA:   3'- -CGuucUUCG---AGCGGCUa--CCGUGCUAg -5'
26030 3' -53 NC_005342.2 + 42704 0.7 0.566085
Target:  5'- aGCGGGcGGCgcucUCGaCCGAUGGCuauuucgucuACGAUCc -3'
miRNA:   3'- -CGUUCuUCG----AGC-GGCUACCG----------UGCUAG- -5'
26030 3' -53 NC_005342.2 + 28652 0.66 0.797312
Target:  5'- uGCGcAGcGGCgCGCCGA-GGCACGcGUUg -3'
miRNA:   3'- -CGU-UCuUCGaGCGGCUaCCGUGC-UAG- -5'
26030 3' -53 NC_005342.2 + 28056 0.66 0.766593
Target:  5'- cGUGAGcacGuCUUGCCaGAUGcGCGCGAUCu -3'
miRNA:   3'- -CGUUCuu-C-GAGCGG-CUAC-CGUGCUAG- -5'
26030 3' -53 NC_005342.2 + 41018 0.67 0.71262
Target:  5'- aCGAGGccgAGCUCGCCcg-GcGCGCGAUg -3'
miRNA:   3'- cGUUCU---UCGAGCGGcuaC-CGUGCUAg -5'
26030 3' -53 NC_005342.2 + 20666 0.69 0.599837
Target:  5'- gGCAGGAGGCgcacgggaugaCGCCGgAUGGCguguACgGAUCg -3'
miRNA:   3'- -CGUUCUUCGa----------GCGGC-UACCG----UG-CUAG- -5'
26030 3' -53 NC_005342.2 + 22954 0.72 0.418435
Target:  5'- cGCAAGcuGUUCGCCGccGGCAgcgucgcgguacCGGUCg -3'
miRNA:   3'- -CGUUCuuCGAGCGGCuaCCGU------------GCUAG- -5'
26030 3' -53 NC_005342.2 + 45627 0.66 0.766593
Target:  5'- uCGAGguGCUUGCCGAgcUGGcCGCGuugCg -3'
miRNA:   3'- cGUUCuuCGAGCGGCU--ACC-GUGCua-G- -5'
26030 3' -53 NC_005342.2 + 29668 0.72 0.418435
Target:  5'- cGCGAGAAGCgcgUGCCGA--GCGCGGc- -3'
miRNA:   3'- -CGUUCUUCGa--GCGGCUacCGUGCUag -5'
26030 3' -53 NC_005342.2 + 44432 0.67 0.71262
Target:  5'- -gAAGgcGUUCGCCGA-GGCGCa--- -3'
miRNA:   3'- cgUUCuuCGAGCGGCUaCCGUGcuag -5'
26030 3' -53 NC_005342.2 + 18294 0.66 0.776996
Target:  5'- ---cGAAGUucuUCGCCGGcacgcgcgUGcGCACGAUCc -3'
miRNA:   3'- cguuCUUCG---AGCGGCU--------AC-CGUGCUAG- -5'
26030 3' -53 NC_005342.2 + 19538 0.71 0.47914
Target:  5'- cGCAAGcuGaugggCGCCGGUcGCACGGUCg -3'
miRNA:   3'- -CGUUCuuCga---GCGGCUAcCGUGCUAG- -5'
26030 3' -53 NC_005342.2 + 10850 0.66 0.756043
Target:  5'- cGCGGGAAGaaCGCC---GGCGCGAcagUCa -3'
miRNA:   3'- -CGUUCUUCgaGCGGcuaCCGUGCU---AG- -5'
26030 3' -53 NC_005342.2 + 3298 0.69 0.599837
Target:  5'- cGCAGGAuAGCU-GCCGAcuucuucGGCGCGcgCg -3'
miRNA:   3'- -CGUUCU-UCGAgCGGCUa------CCGUGCuaG- -5'
26030 3' -53 NC_005342.2 + 10327 0.68 0.656536
Target:  5'- cGCAGGcaguuuGGCgUCGCCGAgaGCGCGaAUCg -3'
miRNA:   3'- -CGUUCu-----UCG-AGCGGCUacCGUGC-UAG- -5'
26030 3' -53 NC_005342.2 + 36762 0.68 0.656536
Target:  5'- gGCAAGGAGCcgCGcCCGAaucacgUGcGCGCgGGUCg -3'
miRNA:   3'- -CGUUCUUCGa-GC-GGCU------AC-CGUG-CUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.