miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26030 3' -53 NC_005342.2 + 641 0.69 0.633851
Target:  5'- cGCAAGGcacgguAGUgcccgUGCuCGGUGaGCGCGAUCg -3'
miRNA:   3'- -CGUUCU------UCGa----GCG-GCUAC-CGUGCUAG- -5'
26030 3' -53 NC_005342.2 + 2844 0.66 0.776996
Target:  5'- cCAGGucugcGGcCUUGCCGAccUGGCGCuGGUCu -3'
miRNA:   3'- cGUUCu----UC-GAGCGGCU--ACCGUG-CUAG- -5'
26030 3' -53 NC_005342.2 + 3298 0.69 0.599837
Target:  5'- cGCAGGAuAGCU-GCCGAcuucuucGGCGCGcgCg -3'
miRNA:   3'- -CGUUCU-UCGAgCGGCUa------CCGUGCuaG- -5'
26030 3' -53 NC_005342.2 + 7510 0.67 0.701523
Target:  5'- cGCGuucAGGAGCgacuugcCGCCGccGGUgACGAUCg -3'
miRNA:   3'- -CGU---UCUUCGa------GCGGCuaCCG-UGCUAG- -5'
26030 3' -53 NC_005342.2 + 8206 0.66 0.784184
Target:  5'- uGCGAGgcGUccgCGCCG-UGGCGCcgcgcgaguuccguGAUCa -3'
miRNA:   3'- -CGUUCuuCGa--GCGGCuACCGUG--------------CUAG- -5'
26030 3' -53 NC_005342.2 + 9924 0.67 0.701523
Target:  5'- uCGAGgcGCauuUCGCCGGUcgccgcGuGCACGGUCg -3'
miRNA:   3'- cGUUCuuCG---AGCGGCUA------C-CGUGCUAG- -5'
26030 3' -53 NC_005342.2 + 10327 0.68 0.656536
Target:  5'- cGCAGGcaguuuGGCgUCGCCGAgaGCGCGaAUCg -3'
miRNA:   3'- -CGUUCu-----UCG-AGCGGCUacCGUGC-UAG- -5'
26030 3' -53 NC_005342.2 + 10850 0.66 0.756043
Target:  5'- cGCGGGAAGaaCGCC---GGCGCGAcagUCa -3'
miRNA:   3'- -CGUUCUUCgaGCGGcuaCCGUGCU---AG- -5'
26030 3' -53 NC_005342.2 + 13141 0.69 0.599837
Target:  5'- gGCuu-GAGCaugUCGCCGAccgGGCGCGAUa -3'
miRNA:   3'- -CGuucUUCG---AGCGGCUa--CCGUGCUAg -5'
26030 3' -53 NC_005342.2 + 13203 0.7 0.531745
Target:  5'- cGCAGGAcAGCgcgucaCGCCGAUgguguucGGCGCGAc- -3'
miRNA:   3'- -CGUUCU-UCGa-----GCGGCUA-------CCGUGCUag -5'
26030 3' -53 NC_005342.2 + 17896 0.66 0.78724
Target:  5'- cGCGuGAAGCUgucCGCCGGUgcGGC-CGcgCg -3'
miRNA:   3'- -CGUuCUUCGA---GCGGCUA--CCGuGCuaG- -5'
26030 3' -53 NC_005342.2 + 18294 0.66 0.776996
Target:  5'- ---cGAAGUucuUCGCCGGcacgcgcgUGcGCACGAUCc -3'
miRNA:   3'- cguuCUUCG---AGCGGCU--------AC-CGUGCUAG- -5'
26030 3' -53 NC_005342.2 + 18972 0.73 0.368878
Target:  5'- cGCGAGAAGCUgaucugcgaugCGCUGAcaaaagcagguuucUGGCGCGAc- -3'
miRNA:   3'- -CGUUCUUCGA-----------GCGGCU--------------ACCGUGCUag -5'
26030 3' -53 NC_005342.2 + 19538 0.71 0.47914
Target:  5'- cGCAAGcuGaugggCGCCGGUcGCACGGUCg -3'
miRNA:   3'- -CGUUCuuCga---GCGGCUAcCGUGCUAG- -5'
26030 3' -53 NC_005342.2 + 19906 0.66 0.807201
Target:  5'- gGCAAGAcguGCUcaCGCCGAUcacGaGCgauACGAUCa -3'
miRNA:   3'- -CGUUCUu--CGA--GCGGCUA---C-CG---UGCUAG- -5'
26030 3' -53 NC_005342.2 + 20666 0.69 0.599837
Target:  5'- gGCAGGAGGCgcacgggaugaCGCCGgAUGGCguguACgGAUCg -3'
miRNA:   3'- -CGUUCUUCGa----------GCGGC-UACCG----UG-CUAG- -5'
26030 3' -53 NC_005342.2 + 22954 0.72 0.418435
Target:  5'- cGCAAGcuGUUCGCCGccGGCAgcgucgcgguacCGGUCg -3'
miRNA:   3'- -CGUUCuuCGAGCGGCuaCCGU------------GCUAG- -5'
26030 3' -53 NC_005342.2 + 26125 0.68 0.655404
Target:  5'- aGCAGGAcgAGCUcCGUgugcgugCGAUGGUACGuuuUCa -3'
miRNA:   3'- -CGUUCU--UCGA-GCG-------GCUACCGUGCu--AG- -5'
26030 3' -53 NC_005342.2 + 28013 0.71 0.511071
Target:  5'- aGCAcucgacGGcGGCUCGCCGcccGGCGCGcUCg -3'
miRNA:   3'- -CGU------UCuUCGAGCGGCua-CCGUGCuAG- -5'
26030 3' -53 NC_005342.2 + 28056 0.66 0.766593
Target:  5'- cGUGAGcacGuCUUGCCaGAUGcGCGCGAUCu -3'
miRNA:   3'- -CGUUCuu-C-GAGCGG-CUAC-CGUGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.