miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26030 5' -66 NC_005342.2 + 12155 0.68 0.152684
Target:  5'- uGGCgCGCaGCGCCgcgucacgGGCCaGCUCGUCGu -3'
miRNA:   3'- uCUGgGCG-CGCGG--------CCGGaCGGGCAGC- -5'
26030 5' -66 NC_005342.2 + 8623 0.68 0.15667
Target:  5'- cGGCgCgGCGC-CCGGCUUGCUCGUg- -3'
miRNA:   3'- uCUG-GgCGCGcGGCCGGACGGGCAgc -5'
26030 5' -66 NC_005342.2 + 25703 0.68 0.160338
Target:  5'- -cGCCCGCGagaauggcuugcuCGCCGGCCagcugcagGCCaGUCGg -3'
miRNA:   3'- ucUGGGCGC-------------GCGGCCGGa-------CGGgCAGC- -5'
26030 5' -66 NC_005342.2 + 29845 0.68 0.16075
Target:  5'- aAGAugcCCUGCGCGCCuuGGCCgccGCCUuUCGu -3'
miRNA:   3'- -UCU---GGGCGCGCGG--CCGGa--CGGGcAGC- -5'
26030 5' -66 NC_005342.2 + 3185 0.68 0.164925
Target:  5'- cGGCCCgGCGCGCC-GCCcGCCCc--- -3'
miRNA:   3'- uCUGGG-CGCGCGGcCGGaCGGGcagc -5'
26030 5' -66 NC_005342.2 + 18172 0.68 0.164925
Target:  5'- -uGCCgGCGUGCCGGgUgaugcGCUCGUCGu -3'
miRNA:   3'- ucUGGgCGCGCGGCCgGa----CGGGCAGC- -5'
26030 5' -66 NC_005342.2 + 67 0.68 0.169198
Target:  5'- -uGCCUGCcCGCCGGU--GCCCGUUGu -3'
miRNA:   3'- ucUGGGCGcGCGGCCGgaCGGGCAGC- -5'
26030 5' -66 NC_005342.2 + 30128 0.68 0.169198
Target:  5'- cGGACCgaauuCGCGCGCCGuagcgacuGCCUcgcGCCaCGUCu -3'
miRNA:   3'- -UCUGG-----GCGCGCGGC--------CGGA---CGG-GCAGc -5'
26030 5' -66 NC_005342.2 + 26740 0.68 0.169198
Target:  5'- cAGAUgCGCGCGaCGGCC-GCCCaUUGa -3'
miRNA:   3'- -UCUGgGCGCGCgGCCGGaCGGGcAGC- -5'
26030 5' -66 NC_005342.2 + 15503 0.68 0.169198
Target:  5'- cGACCUGCGCGUgaCGuuCUGCUCGcCGg -3'
miRNA:   3'- uCUGGGCGCGCG--GCcgGACGGGCaGC- -5'
26030 5' -66 NC_005342.2 + 38052 0.68 0.169198
Target:  5'- -cACCUGCGCGgCGaCCUGCUCGUg- -3'
miRNA:   3'- ucUGGGCGCGCgGCcGGACGGGCAgc -5'
26030 5' -66 NC_005342.2 + 846 0.68 0.173569
Target:  5'- cGACUgGCGCGCUGGCggcagCUGCagccuUGUCGg -3'
miRNA:   3'- uCUGGgCGCGCGGCCG-----GACGg----GCAGC- -5'
26030 5' -66 NC_005342.2 + 30673 0.68 0.173569
Target:  5'- aGGACgC-UGCGCCGGCCgGCguucaCGUCGa -3'
miRNA:   3'- -UCUGgGcGCGCGGCCGGaCGg----GCAGC- -5'
26030 5' -66 NC_005342.2 + 47860 0.68 0.173569
Target:  5'- cGGGCgCGCgcaccGCGCCGGCauggUGaCCGUCGa -3'
miRNA:   3'- -UCUGgGCG-----CGCGGCCGg---ACgGGCAGC- -5'
26030 5' -66 NC_005342.2 + 31344 0.67 0.182153
Target:  5'- uGGCCgCGCGCGUgaacaguCGGCCgaucUGCUCGaUCGg -3'
miRNA:   3'- uCUGG-GCGCGCG-------GCCGG----ACGGGC-AGC- -5'
26030 5' -66 NC_005342.2 + 35846 0.67 0.182615
Target:  5'- cGGCCUGCGCGaCCGGCgCaaccuucaacGCCuCGUUGa -3'
miRNA:   3'- uCUGGGCGCGC-GGCCG-Ga---------CGG-GCAGC- -5'
26030 5' -66 NC_005342.2 + 39388 0.67 0.182615
Target:  5'- gAGGCggCGCGCuuccugGUCGGCCUGCCUG-CGc -3'
miRNA:   3'- -UCUGg-GCGCG------CGGCCGGACGGGCaGC- -5'
26030 5' -66 NC_005342.2 + 5013 0.67 0.187292
Target:  5'- cGGCCagGCG-GCCGGCUguugGCCgaCGUCGg -3'
miRNA:   3'- uCUGGg-CGCgCGGCCGGa---CGG--GCAGC- -5'
26030 5' -66 NC_005342.2 + 21160 0.67 0.187292
Target:  5'- uGGugCgcuuCGCGCugccgcagGCCGGCCUGCUCGgggCa -3'
miRNA:   3'- -UCugG----GCGCG--------CGGCCGGACGGGCa--Gc -5'
26030 5' -66 NC_005342.2 + 25127 0.67 0.187292
Target:  5'- cGGCgCGCaCGUucgCGGCCUGCCCGa-- -3'
miRNA:   3'- uCUGgGCGcGCG---GCCGGACGGGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.