miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26030 5' -66 NC_005342.2 + 43320 1.07 0.000137
Target:  5'- aAGACCCGCGCGCCGGCCUGCCCGUCGc -3'
miRNA:   3'- -UCUGGGCGCGCGGCCGGACGGGCAGC- -5'
26030 5' -66 NC_005342.2 + 37390 0.79 0.023614
Target:  5'- cGACCCGCuCGUCGGCCgGCCCGgcgCGu -3'
miRNA:   3'- uCUGGGCGcGCGGCCGGaCGGGCa--GC- -5'
26030 5' -66 NC_005342.2 + 43349 0.78 0.026381
Target:  5'- cGGCCCGUGCGuCCGGCCUGCaCCa--- -3'
miRNA:   3'- uCUGGGCGCGC-GGCCGGACG-GGcagc -5'
26030 5' -66 NC_005342.2 + 25987 0.72 0.083221
Target:  5'- cGGCCCGCaGUGCgGGCC-GUuuGUCGu -3'
miRNA:   3'- uCUGGGCG-CGCGgCCGGaCGggCAGC- -5'
26030 5' -66 NC_005342.2 + 34012 0.71 0.090191
Target:  5'- -aGCUCGCGCGCacCGGCCgccgGCCCGaagUCGc -3'
miRNA:   3'- ucUGGGCGCGCG--GCCGGa---CGGGC---AGC- -5'
26030 5' -66 NC_005342.2 + 26710 0.7 0.10838
Target:  5'- -uGCCCGcCGCGCCGGCCaggaacuUGaCCCauugcGUCGg -3'
miRNA:   3'- ucUGGGC-GCGCGGCCGG-------AC-GGG-----CAGC- -5'
26030 5' -66 NC_005342.2 + 37589 0.7 0.108667
Target:  5'- gAGGCCgGUgaGCGCuuCGGCCUGCUCG-CGa -3'
miRNA:   3'- -UCUGGgCG--CGCG--GCCGGACGGGCaGC- -5'
26030 5' -66 NC_005342.2 + 35476 0.7 0.111286
Target:  5'- cAGAUaCCGCGUGCCGaaGCCUGUCCaagccggGUCGc -3'
miRNA:   3'- -UCUG-GGCGCGCGGC--CGGACGGG-------CAGC- -5'
26030 5' -66 NC_005342.2 + 17207 0.7 0.116702
Target:  5'- cGACCacuGcCGCuacugcaaggcaaaGCCGGCCUGCCCG-CGc -3'
miRNA:   3'- uCUGGg--C-GCG--------------CGGCCGGACGGGCaGC- -5'
26030 5' -66 NC_005342.2 + 19331 0.7 0.117628
Target:  5'- cGGCaaGUacGCGCCGGCCUGCgCCGagcgCGa -3'
miRNA:   3'- uCUGggCG--CGCGGCCGGACG-GGCa---GC- -5'
26030 5' -66 NC_005342.2 + 11179 0.69 0.129627
Target:  5'- cGACCCGCGCGCacgugauucgggcgCGGCUccuUGCCgGcgcUCGa -3'
miRNA:   3'- uCUGGGCGCGCG--------------GCCGG---ACGGgC---AGC- -5'
26030 5' -66 NC_005342.2 + 23425 0.69 0.130648
Target:  5'- -uACCCGC-CGCCGGCCgGaUCgGUCGa -3'
miRNA:   3'- ucUGGGCGcGCGGCCGGaC-GGgCAGC- -5'
26030 5' -66 NC_005342.2 + 16080 0.69 0.134105
Target:  5'- -aGCgCGUG-GCCGGCCUGCCgacaGUCGc -3'
miRNA:   3'- ucUGgGCGCgCGGCCGGACGGg---CAGC- -5'
26030 5' -66 NC_005342.2 + 4826 0.69 0.134105
Target:  5'- cGACCCGaGCGUCuGCCUGCgCGggCGg -3'
miRNA:   3'- uCUGGGCgCGCGGcCGGACGgGCa-GC- -5'
26030 5' -66 NC_005342.2 + 10205 0.69 0.141273
Target:  5'- ---gCUGCGCG-CGGUCUGCuuGUCGa -3'
miRNA:   3'- ucugGGCGCGCgGCCGGACGggCAGC- -5'
26030 5' -66 NC_005342.2 + 23346 0.69 0.144612
Target:  5'- -cGCCUGCGCGuuugugagcgucaCCGuGCC-GCCCGUCa -3'
miRNA:   3'- ucUGGGCGCGC-------------GGC-CGGaCGGGCAGc -5'
26030 5' -66 NC_005342.2 + 23830 0.69 0.144987
Target:  5'- cGGCCgcgaacauUGCGCGCUGcGaCUGUCCGUCGa -3'
miRNA:   3'- uCUGG--------GCGCGCGGC-CgGACGGGCAGC- -5'
26030 5' -66 NC_005342.2 + 19928 0.69 0.144987
Target:  5'- cGACgaGCGCGCCGGgCgGCgagccgCCGUCGa -3'
miRNA:   3'- uCUGggCGCGCGGCCgGaCG------GGCAGC- -5'
26030 5' -66 NC_005342.2 + 6933 0.68 0.14879
Target:  5'- ---aUCGCGCGCCGGgCgagcucgGCCuCGUCGa -3'
miRNA:   3'- ucugGGCGCGCGGCCgGa------CGG-GCAGC- -5'
26030 5' -66 NC_005342.2 + 12155 0.68 0.152684
Target:  5'- uGGCgCGCaGCGCCgcgucacgGGCCaGCUCGUCGu -3'
miRNA:   3'- uCUGgGCG-CGCGG--------CCGGaCGGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.