Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26030 | 5' | -66 | NC_005342.2 | + | 37390 | 0.79 | 0.023614 |
Target: 5'- cGACCCGCuCGUCGGCCgGCCCGgcgCGu -3' miRNA: 3'- uCUGGGCGcGCGGCCGGaCGGGCa--GC- -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 67 | 0.68 | 0.169198 |
Target: 5'- -uGCCUGCcCGCCGGU--GCCCGUUGu -3' miRNA: 3'- ucUGGGCGcGCGGCCGgaCGGGCAGC- -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 47860 | 0.68 | 0.173569 |
Target: 5'- cGGGCgCGCgcaccGCGCCGGCauggUGaCCGUCGa -3' miRNA: 3'- -UCUGgGCG-----CGCGGCCGg---ACgGGCAGC- -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 30859 | 0.66 | 0.240099 |
Target: 5'- cGGCgaaCGCGuCGCC-GCCUGCCuuggCGUCGc -3' miRNA: 3'- uCUGg--GCGC-GCGGcCGGACGG----GCAGC- -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 35476 | 0.7 | 0.111286 |
Target: 5'- cAGAUaCCGCGUGCCGaaGCCUGUCCaagccggGUCGc -3' miRNA: 3'- -UCUG-GGCGCGCGGC--CGGACGGG-------CAGC- -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 17207 | 0.7 | 0.116702 |
Target: 5'- cGACCacuGcCGCuacugcaaggcaaaGCCGGCCUGCCCG-CGc -3' miRNA: 3'- uCUGGg--C-GCG--------------CGGCCGGACGGGCaGC- -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 23425 | 0.69 | 0.130648 |
Target: 5'- -uACCCGC-CGCCGGCCgGaUCgGUCGa -3' miRNA: 3'- ucUGGGCGcGCGGCCGGaC-GGgCAGC- -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 10205 | 0.69 | 0.141273 |
Target: 5'- ---gCUGCGCG-CGGUCUGCuuGUCGa -3' miRNA: 3'- ucugGGCGCGCgGCCGGACGggCAGC- -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 41466 | 0.68 | 0.152684 |
Target: 5'- cGACUCGCGCGCCGGgCUauggGUCUG-Ca -3' miRNA: 3'- uCUGGGCGCGCGGCCgGA----CGGGCaGc -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 3185 | 0.68 | 0.164925 |
Target: 5'- cGGCCCgGCGCGCC-GCCcGCCCc--- -3' miRNA: 3'- uCUGGG-CGCGCGGcCGGaCGGGcagc -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 25703 | 0.68 | 0.160338 |
Target: 5'- -cGCCCGCGagaauggcuugcuCGCCGGCCagcugcagGCCaGUCGg -3' miRNA: 3'- ucUGGGCGC-------------GCGGCCGGa-------CGGgCAGC- -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 19928 | 0.69 | 0.144987 |
Target: 5'- cGACgaGCGCGCCGGgCgGCgagccgCCGUCGa -3' miRNA: 3'- uCUGggCGCGCGGCCgGaCG------GGCAGC- -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 43349 | 0.78 | 0.026381 |
Target: 5'- cGGCCCGUGCGuCCGGCCUGCaCCa--- -3' miRNA: 3'- uCUGGGCGCGC-GGCCGGACG-GGcagc -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 29845 | 0.68 | 0.16075 |
Target: 5'- aAGAugcCCUGCGCGCCuuGGCCgccGCCUuUCGu -3' miRNA: 3'- -UCU---GGGCGCGCGG--CCGGa--CGGGcAGC- -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 26710 | 0.7 | 0.10838 |
Target: 5'- -uGCCCGcCGCGCCGGCCaggaacuUGaCCCauugcGUCGg -3' miRNA: 3'- ucUGGGC-GCGCGGCCGG-------AC-GGG-----CAGC- -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 23346 | 0.69 | 0.144612 |
Target: 5'- -cGCCUGCGCGuuugugagcgucaCCGuGCC-GCCCGUCa -3' miRNA: 3'- ucUGGGCGCGC-------------GGC-CGGaCGGGCAGc -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 18172 | 0.68 | 0.164925 |
Target: 5'- -uGCCgGCGUGCCGGgUgaugcGCUCGUCGu -3' miRNA: 3'- ucUGGgCGCGCGGCCgGa----CGGGCAGC- -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 30128 | 0.68 | 0.169198 |
Target: 5'- cGGACCgaauuCGCGCGCCGuagcgacuGCCUcgcGCCaCGUCu -3' miRNA: 3'- -UCUGG-----GCGCGCGGC--------CGGA---CGG-GCAGc -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 37589 | 0.7 | 0.108667 |
Target: 5'- gAGGCCgGUgaGCGCuuCGGCCUGCUCG-CGa -3' miRNA: 3'- -UCUGGgCG--CGCG--GCCGGACGGGCaGC- -5' |
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26030 | 5' | -66 | NC_005342.2 | + | 11179 | 0.69 | 0.129627 |
Target: 5'- cGACCCGCGCGCacgugauucgggcgCGGCUccuUGCCgGcgcUCGa -3' miRNA: 3'- uCUGGGCGCGCG--------------GCCGG---ACGGgC---AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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