miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26030 5' -66 NC_005342.2 + 67 0.68 0.169198
Target:  5'- -uGCCUGCcCGCCGGU--GCCCGUUGu -3'
miRNA:   3'- ucUGGGCGcGCGGCCGgaCGGGCAGC- -5'
26030 5' -66 NC_005342.2 + 168 0.67 0.192075
Target:  5'- -uGCCCGUGCGCCcgccggcuuGGCUUGCgCCauaaaugugcGUCGg -3'
miRNA:   3'- ucUGGGCGCGCGG---------CCGGACG-GG----------CAGC- -5'
26030 5' -66 NC_005342.2 + 705 0.66 0.228626
Target:  5'- -uACUgGuCGCGCCGGCCggcGCCuCGUUc -3'
miRNA:   3'- ucUGGgC-GCGCGGCCGGa--CGG-GCAGc -5'
26030 5' -66 NC_005342.2 + 765 0.66 0.228626
Target:  5'- cGACCUugaGCGUGCCGGUC-GCCgG-CGc -3'
miRNA:   3'- uCUGGG---CGCGCGGCCGGaCGGgCaGC- -5'
26030 5' -66 NC_005342.2 + 846 0.68 0.173569
Target:  5'- cGACUgGCGCGCUGGCggcagCUGCagccuUGUCGg -3'
miRNA:   3'- uCUGGgCGCGCGGCCG-----GACGg----GCAGC- -5'
26030 5' -66 NC_005342.2 + 3185 0.68 0.164925
Target:  5'- cGGCCCgGCGCGCC-GCCcGCCCc--- -3'
miRNA:   3'- uCUGGG-CGCGCGGcCGGaCGGGcagc -5'
26030 5' -66 NC_005342.2 + 4639 0.66 0.238348
Target:  5'- cAGGCCgGCGCGCgGGUCuuucuucaggaucgUGCCa-UCGg -3'
miRNA:   3'- -UCUGGgCGCGCGgCCGG--------------ACGGgcAGC- -5'
26030 5' -66 NC_005342.2 + 4826 0.69 0.134105
Target:  5'- cGACCCGaGCGUCuGCCUGCgCGggCGg -3'
miRNA:   3'- uCUGGGCgCGCGGcCGGACGgGCa-GC- -5'
26030 5' -66 NC_005342.2 + 5013 0.67 0.187292
Target:  5'- cGGCCagGCG-GCCGGCUguugGCCgaCGUCGg -3'
miRNA:   3'- uCUGGg-CGCgCGGCCGGa---CGG--GCAGC- -5'
26030 5' -66 NC_005342.2 + 6769 0.66 0.234303
Target:  5'- cGACa-GCGCGCCGaUCUucGCCUGUCGc -3'
miRNA:   3'- uCUGggCGCGCGGCcGGA--CGGGCAGC- -5'
26030 5' -66 NC_005342.2 + 6933 0.68 0.14879
Target:  5'- ---aUCGCGCGCCGGgCgagcucgGCCuCGUCGa -3'
miRNA:   3'- ucugGGCGCGCGGCCgGa------CGG-GCAGC- -5'
26030 5' -66 NC_005342.2 + 7815 0.67 0.192075
Target:  5'- uGuCCCGCuuaguaggagugGCGUugCGGCCuuUGCCCGUCu -3'
miRNA:   3'- uCuGGGCG------------CGCG--GCCGG--ACGGGCAGc -5'
26030 5' -66 NC_005342.2 + 8623 0.68 0.15667
Target:  5'- cGGCgCgGCGC-CCGGCUUGCUCGUg- -3'
miRNA:   3'- uCUG-GgCGCGcGGCCGGACGGGCAgc -5'
26030 5' -66 NC_005342.2 + 8902 0.67 0.201962
Target:  5'- cGACgCGgcuucguuCGCGCCGGCgCUGUCCaUCGc -3'
miRNA:   3'- uCUGgGC--------GCGCGGCCG-GACGGGcAGC- -5'
26030 5' -66 NC_005342.2 + 8973 0.67 0.196964
Target:  5'- cGACCgaCGCGCGUucgCGGCUUGCCaggCGg -3'
miRNA:   3'- uCUGG--GCGCGCG---GCCGGACGGgcaGC- -5'
26030 5' -66 NC_005342.2 + 10205 0.69 0.141273
Target:  5'- ---gCUGCGCG-CGGUCUGCuuGUCGa -3'
miRNA:   3'- ucugGGCGCGCgGCCGGACGggCAGC- -5'
26030 5' -66 NC_005342.2 + 11179 0.69 0.129627
Target:  5'- cGACCCGCGCGCacgugauucgggcgCGGCUccuUGCCgGcgcUCGa -3'
miRNA:   3'- uCUGGGCGCGCG--------------GCCGG---ACGGgC---AGC- -5'
26030 5' -66 NC_005342.2 + 11264 0.66 0.223065
Target:  5'- ---gCCGCGCGCUGuugaaCUGCgCCGUCGc -3'
miRNA:   3'- ucugGGCGCGCGGCcg---GACG-GGCAGC- -5'
26030 5' -66 NC_005342.2 + 11807 0.67 0.19647
Target:  5'- cGGCgCGCuccagcuuGCGCCGGUacaucgcuuccguCUGCCgGUCGg -3'
miRNA:   3'- uCUGgGCG--------CGCGGCCG-------------GACGGgCAGC- -5'
26030 5' -66 NC_005342.2 + 12155 0.68 0.152684
Target:  5'- uGGCgCGCaGCGCCgcgucacgGGCCaGCUCGUCGu -3'
miRNA:   3'- uCUGgGCG-CGCGG--------CCGGaCGGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.