miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26031 3' -51.8 NC_005342.2 + 31562 0.68 0.704671
Target:  5'- --aGCUGCaGCGGGUUGUUUgccuGCAucUGCu -3'
miRNA:   3'- acaCGACG-CGCUCGACAAGu---UGU--ACG- -5'
26031 3' -51.8 NC_005342.2 + 40117 0.68 0.715926
Target:  5'- aUGggGCgaGCGCGAGCUGgaaauGGCcgGCg -3'
miRNA:   3'- -ACa-CGa-CGCGCUCGACaag--UUGuaCG- -5'
26031 3' -51.8 NC_005342.2 + 30343 0.68 0.727089
Target:  5'- cGUGCagcaGCGCG-GCaagGcgCGGCGUGCg -3'
miRNA:   3'- aCACGa---CGCGCuCGa--CaaGUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 11114 0.68 0.738148
Target:  5'- cGUGCgGCGUGAGCgcUUCgAGCAcGCc -3'
miRNA:   3'- aCACGaCGCGCUCGacAAG-UUGUaCG- -5'
26031 3' -51.8 NC_005342.2 + 47020 0.67 0.74909
Target:  5'- aGUGC-GCGCGAauGCUGcgCcGCAaGCa -3'
miRNA:   3'- aCACGaCGCGCU--CGACaaGuUGUaCG- -5'
26031 3' -51.8 NC_005342.2 + 17739 0.67 0.74909
Target:  5'- gGUGgUGCGCaAGCa-UUCAGCcgGCg -3'
miRNA:   3'- aCACgACGCGcUCGacAAGUUGuaCG- -5'
26031 3' -51.8 NC_005342.2 + 38831 0.67 0.74909
Target:  5'- --aGCUGCGguCGAGCaGgcaaagcgCGACGUGCg -3'
miRNA:   3'- acaCGACGC--GCUCGaCaa------GUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 19365 0.67 0.74909
Target:  5'- cGUGCgGCaCGAGCgc-UCgAGCGUGCa -3'
miRNA:   3'- aCACGaCGcGCUCGacaAG-UUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 33670 0.67 0.74909
Target:  5'- --gGCgaacgGCGcCGcGCUGaUCGACAUGCu -3'
miRNA:   3'- acaCGa----CGC-GCuCGACaAGUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 28406 0.67 0.764186
Target:  5'- cGUGCUGCugccagaucGCGAGCagcacgacuucCGGCAUGCc -3'
miRNA:   3'- aCACGACG---------CGCUCGacaa-------GUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 3491 0.67 0.791421
Target:  5'- --aGCUGCuGCG-GCUGaUCGGCGUaaaGCg -3'
miRNA:   3'- acaCGACG-CGCuCGACaAGUUGUA---CG- -5'
26031 3' -51.8 NC_005342.2 + 21786 0.66 0.80158
Target:  5'- aGUGCcGCGCGAGUgg--CAGCugaaaGCg -3'
miRNA:   3'- aCACGaCGCGCUCGacaaGUUGua---CG- -5'
26031 3' -51.8 NC_005342.2 + 1475 0.66 0.80158
Target:  5'- cGaaCUGCGCGAGCgacgGcgagUCGGCcUGCa -3'
miRNA:   3'- aCacGACGCGCUCGa---Ca---AGUUGuACG- -5'
26031 3' -51.8 NC_005342.2 + 29132 0.66 0.811544
Target:  5'- -cUGCcGCGCGGGCU--UCGAUA-GCa -3'
miRNA:   3'- acACGaCGCGCUCGAcaAGUUGUaCG- -5'
26031 3' -51.8 NC_005342.2 + 6673 0.66 0.821301
Target:  5'- cGUGCgggGCGCauuggcgacGAGCcaugcGUgCAACGUGCu -3'
miRNA:   3'- aCACGa--CGCG---------CUCGa----CAaGUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 20331 0.66 0.821301
Target:  5'- cUGUGCc-CGUGAauGCUGgcaaCGGCAUGCa -3'
miRNA:   3'- -ACACGacGCGCU--CGACaa--GUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 21646 0.66 0.83084
Target:  5'- -aUGCUGCGCGcGCaGaUCGGCcauuUGCu -3'
miRNA:   3'- acACGACGCGCuCGaCaAGUUGu---ACG- -5'
26031 3' -51.8 NC_005342.2 + 46606 0.66 0.83084
Target:  5'- aGUGCcgcgaGCGCcuGCUGUUCAuGC-UGCa -3'
miRNA:   3'- aCACGa----CGCGcuCGACAAGU-UGuACG- -5'
26031 3' -51.8 NC_005342.2 + 7483 0.66 0.83084
Target:  5'- gGU-CUGCGCGAugcGCUcGaUCAGCAUcGCg -3'
miRNA:   3'- aCAcGACGCGCU---CGA-CaAGUUGUA-CG- -5'
26031 3' -51.8 NC_005342.2 + 36785 0.66 0.839229
Target:  5'- cGUGC-GCGCGGGUcGcgagaaguggauuUUCAACAcGCa -3'
miRNA:   3'- aCACGaCGCGCUCGaC-------------AAGUUGUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.