miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26031 3' -51.8 NC_005342.2 + 42872 1.13 0.000899
Target:  5'- aUGUGCUGCGCGAGCUGUUCAACAUGCu -3'
miRNA:   3'- -ACACGACGCGCUCGACAAGUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 2887 0.81 0.13861
Target:  5'- cGUGCUGCGCG-GCcGUcguaaccgUCAGCGUGCc -3'
miRNA:   3'- aCACGACGCGCuCGaCA--------AGUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 38895 0.78 0.218412
Target:  5'- cGUGCUGCGCGcGCUGcaccggCAGCAcGCc -3'
miRNA:   3'- aCACGACGCGCuCGACaa----GUUGUaCG- -5'
26031 3' -51.8 NC_005342.2 + 41808 0.78 0.224523
Target:  5'- cGUGCUGCGCGAcgagGCgUGUcgCGAgGUGCg -3'
miRNA:   3'- aCACGACGCGCU----CG-ACAa-GUUgUACG- -5'
26031 3' -51.8 NC_005342.2 + 30571 0.77 0.257284
Target:  5'- --cGCUGUGCGAGCaGUUCGAUgcGCu -3'
miRNA:   3'- acaCGACGCGCUCGaCAAGUUGuaCG- -5'
26031 3' -51.8 NC_005342.2 + 26237 0.75 0.334352
Target:  5'- --cGCUGCGuCGAGCUGcuggCGcACGUGCg -3'
miRNA:   3'- acaCGACGC-GCUCGACaa--GU-UGUACG- -5'
26031 3' -51.8 NC_005342.2 + 2934 0.72 0.457642
Target:  5'- --aGCUGCGCGAGCgUGacgcccgUCAACGgaaUGCc -3'
miRNA:   3'- acaCGACGCGCUCG-ACa------AGUUGU---ACG- -5'
26031 3' -51.8 NC_005342.2 + 31384 0.72 0.469164
Target:  5'- aUGUGCcuucagcagcagcggGCGaCGAGUUGUcCGGCAUGCc -3'
miRNA:   3'- -ACACGa--------------CGC-GCUCGACAaGUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 8935 0.72 0.489407
Target:  5'- --cGCgUGCGCGGGCUGgau--CGUGCg -3'
miRNA:   3'- acaCG-ACGCGCUCGACaaguuGUACG- -5'
26031 3' -51.8 NC_005342.2 + 15251 0.72 0.500223
Target:  5'- cGUGCUGCgGCGGcGCgg-UCAGCAUcaGCa -3'
miRNA:   3'- aCACGACG-CGCU-CGacaAGUUGUA--CG- -5'
26031 3' -51.8 NC_005342.2 + 21614 0.71 0.533273
Target:  5'- cGUGCgUG-GCGAGCUGUUCcgUAUccGCg -3'
miRNA:   3'- aCACG-ACgCGCUCGACAAGuuGUA--CG- -5'
26031 3' -51.8 NC_005342.2 + 9494 0.71 0.567069
Target:  5'- cGUGCgccUGCGCguuuugcucgacGAGCUGcUUCAGCGcgGCa -3'
miRNA:   3'- aCACG---ACGCG------------CUCGAC-AAGUUGUa-CG- -5'
26031 3' -51.8 NC_005342.2 + 5582 0.71 0.567069
Target:  5'- --cGCUGuUGCGGGCUGcUCGACGggagacgcUGCg -3'
miRNA:   3'- acaCGAC-GCGCUCGACaAGUUGU--------ACG- -5'
26031 3' -51.8 NC_005342.2 + 19544 0.7 0.578462
Target:  5'- cGUGCUGCucGCGAuCUGgcagCAGCAcGCg -3'
miRNA:   3'- aCACGACG--CGCUcGACaa--GUUGUaCG- -5'
26031 3' -51.8 NC_005342.2 + 44611 0.7 0.589903
Target:  5'- --cGCUGCGCcAGCUGaUCGAgcUGCg -3'
miRNA:   3'- acaCGACGCGcUCGACaAGUUguACG- -5'
26031 3' -51.8 NC_005342.2 + 30707 0.7 0.589903
Target:  5'- -cUGCUGCuGCGGGCUGcUCGcacgauAgGUGCg -3'
miRNA:   3'- acACGACG-CGCUCGACaAGU------UgUACG- -5'
26031 3' -51.8 NC_005342.2 + 22912 0.7 0.601384
Target:  5'- gGUGCUGCcgcuCGAGUUGUgCAGCGUa- -3'
miRNA:   3'- aCACGACGc---GCUCGACAaGUUGUAcg -5'
26031 3' -51.8 NC_005342.2 + 23259 0.7 0.612894
Target:  5'- --cGCUGuCGCGcGCgcgGaUCGGCAUGCa -3'
miRNA:   3'- acaCGAC-GCGCuCGa--CaAGUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 28705 0.7 0.612894
Target:  5'- --aGCUGCGCGGccGCcgGaUCGGCGUGUg -3'
miRNA:   3'- acaCGACGCGCU--CGa-CaAGUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 13953 0.69 0.647489
Target:  5'- gGUGC-GCGCGAGCUGa-----GUGCc -3'
miRNA:   3'- aCACGaCGCGCUCGACaaguugUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.