miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26031 3' -51.8 NC_005342.2 + 1475 0.66 0.80158
Target:  5'- cGaaCUGCGCGAGCgacgGcgagUCGGCcUGCa -3'
miRNA:   3'- aCacGACGCGCUCGa---Ca---AGUUGuACG- -5'
26031 3' -51.8 NC_005342.2 + 2887 0.81 0.13861
Target:  5'- cGUGCUGCGCG-GCcGUcguaaccgUCAGCGUGCc -3'
miRNA:   3'- aCACGACGCGCuCGaCA--------AGUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 2934 0.72 0.457642
Target:  5'- --aGCUGCGCGAGCgUGacgcccgUCAACGgaaUGCc -3'
miRNA:   3'- acaCGACGCGCUCG-ACa------AGUUGU---ACG- -5'
26031 3' -51.8 NC_005342.2 + 3269 0.66 0.840149
Target:  5'- gGUGCUGCaGUcGGCcgc-CGACGUGCg -3'
miRNA:   3'- aCACGACG-CGcUCGacaaGUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 3491 0.67 0.791421
Target:  5'- --aGCUGCuGCG-GCUGaUCGGCGUaaaGCg -3'
miRNA:   3'- acaCGACG-CGCuCGACaAGUUGUA---CG- -5'
26031 3' -51.8 NC_005342.2 + 5068 0.66 0.849218
Target:  5'- gGUG-UGCGaCGAGCaUGUUgAACA-GCu -3'
miRNA:   3'- aCACgACGC-GCUCG-ACAAgUUGUaCG- -5'
26031 3' -51.8 NC_005342.2 + 5528 0.66 0.849218
Target:  5'- --gGCUugGCGCGAGUgcagaccGUUCAGCucgauuGUGCg -3'
miRNA:   3'- acaCGA--CGCGCUCGa------CAAGUUG------UACG- -5'
26031 3' -51.8 NC_005342.2 + 5582 0.71 0.567069
Target:  5'- --cGCUGuUGCGGGCUGcUCGACGggagacgcUGCg -3'
miRNA:   3'- acaCGAC-GCGCUCGACaAGUUGU--------ACG- -5'
26031 3' -51.8 NC_005342.2 + 6673 0.66 0.821301
Target:  5'- cGUGCgggGCGCauuggcgacGAGCcaugcGUgCAACGUGCu -3'
miRNA:   3'- aCACGa--CGCG---------CUCGa----CAaGUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 7483 0.66 0.83084
Target:  5'- gGU-CUGCGCGAugcGCUcGaUCAGCAUcGCg -3'
miRNA:   3'- aCAcGACGCGCU---CGA-CaAGUUGUA-CG- -5'
26031 3' -51.8 NC_005342.2 + 8935 0.72 0.489407
Target:  5'- --cGCgUGCGCGGGCUGgau--CGUGCg -3'
miRNA:   3'- acaCG-ACGCGCUCGACaaguuGUACG- -5'
26031 3' -51.8 NC_005342.2 + 9494 0.71 0.567069
Target:  5'- cGUGCgccUGCGCguuuugcucgacGAGCUGcUUCAGCGcgGCa -3'
miRNA:   3'- aCACG---ACGCG------------CUCGAC-AAGUUGUa-CG- -5'
26031 3' -51.8 NC_005342.2 + 11114 0.68 0.738148
Target:  5'- cGUGCgGCGUGAGCgcUUCgAGCAcGCc -3'
miRNA:   3'- aCACGaCGCGCUCGacAAG-UUGUaCG- -5'
26031 3' -51.8 NC_005342.2 + 11260 0.66 0.840149
Target:  5'- --cGUUGcCGCGcGCUGUUgAAC-UGCg -3'
miRNA:   3'- acaCGAC-GCGCuCGACAAgUUGuACG- -5'
26031 3' -51.8 NC_005342.2 + 13953 0.69 0.647489
Target:  5'- gGUGC-GCGCGAGCUGa-----GUGCc -3'
miRNA:   3'- aCACGaCGCGCUCGACaaguugUACG- -5'
26031 3' -51.8 NC_005342.2 + 15251 0.72 0.500223
Target:  5'- cGUGCUGCgGCGGcGCgg-UCAGCAUcaGCa -3'
miRNA:   3'- aCACGACG-CGCU-CGacaAGUUGUA--CG- -5'
26031 3' -51.8 NC_005342.2 + 17739 0.67 0.74909
Target:  5'- gGUGgUGCGCaAGCa-UUCAGCcgGCg -3'
miRNA:   3'- aCACgACGCGcUCGacAAGUUGuaCG- -5'
26031 3' -51.8 NC_005342.2 + 19365 0.67 0.74909
Target:  5'- cGUGCgGCaCGAGCgc-UCgAGCGUGCa -3'
miRNA:   3'- aCACGaCGcGCUCGacaAG-UUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 19544 0.7 0.578462
Target:  5'- cGUGCUGCucGCGAuCUGgcagCAGCAcGCg -3'
miRNA:   3'- aCACGACG--CGCUcGACaa--GUUGUaCG- -5'
26031 3' -51.8 NC_005342.2 + 20331 0.66 0.821301
Target:  5'- cUGUGCc-CGUGAauGCUGgcaaCGGCAUGCa -3'
miRNA:   3'- -ACACGacGCGCU--CGACaa--GUUGUACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.