miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26031 3' -51.8 NC_005342.2 + 2887 0.81 0.13861
Target:  5'- cGUGCUGCGCG-GCcGUcguaaccgUCAGCGUGCc -3'
miRNA:   3'- aCACGACGCGCuCGaCA--------AGUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 3491 0.67 0.791421
Target:  5'- --aGCUGCuGCG-GCUGaUCGGCGUaaaGCg -3'
miRNA:   3'- acaCGACG-CGCuCGACaAGUUGUA---CG- -5'
26031 3' -51.8 NC_005342.2 + 1475 0.66 0.80158
Target:  5'- cGaaCUGCGCGAGCgacgGcgagUCGGCcUGCa -3'
miRNA:   3'- aCacGACGCGCUCGa---Ca---AGUUGuACG- -5'
26031 3' -51.8 NC_005342.2 + 5528 0.66 0.849218
Target:  5'- --gGCUugGCGCGAGUgcagaccGUUCAGCucgauuGUGCg -3'
miRNA:   3'- acaCGA--CGCGCUCGa------CAAGUUG------UACG- -5'
26031 3' -51.8 NC_005342.2 + 8935 0.72 0.489407
Target:  5'- --cGCgUGCGCGGGCUGgau--CGUGCg -3'
miRNA:   3'- acaCG-ACGCGCUCGACaaguuGUACG- -5'
26031 3' -51.8 NC_005342.2 + 15251 0.72 0.500223
Target:  5'- cGUGCUGCgGCGGcGCgg-UCAGCAUcaGCa -3'
miRNA:   3'- aCACGACG-CGCU-CGacaAGUUGUA--CG- -5'
26031 3' -51.8 NC_005342.2 + 30707 0.7 0.589903
Target:  5'- -cUGCUGCuGCGGGCUGcUCGcacgauAgGUGCg -3'
miRNA:   3'- acACGACG-CGCUCGACaAGU------UgUACG- -5'
26031 3' -51.8 NC_005342.2 + 44611 0.7 0.589903
Target:  5'- --cGCUGCGCcAGCUGaUCGAgcUGCg -3'
miRNA:   3'- acaCGACGCGcUCGACaAGUUguACG- -5'
26031 3' -51.8 NC_005342.2 + 13953 0.69 0.647489
Target:  5'- gGUGC-GCGCGAGCUGa-----GUGCc -3'
miRNA:   3'- aCACGaCGCGCUCGACaaguugUACG- -5'
26031 3' -51.8 NC_005342.2 + 28406 0.67 0.764186
Target:  5'- cGUGCUGCugccagaucGCGAGCagcacgacuucCGGCAUGCc -3'
miRNA:   3'- aCACGACG---------CGCUCGacaa-------GUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 30343 0.68 0.727089
Target:  5'- cGUGCagcaGCGCG-GCaagGcgCGGCGUGCg -3'
miRNA:   3'- aCACGa---CGCGCuCGa--CaaGUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 28705 0.7 0.612894
Target:  5'- --aGCUGCGCGGccGCcgGaUCGGCGUGUg -3'
miRNA:   3'- acaCGACGCGCU--CGa-CaAGUUGUACG- -5'
26031 3' -51.8 NC_005342.2 + 38895 0.78 0.218412
Target:  5'- cGUGCUGCGCGcGCUGcaccggCAGCAcGCc -3'
miRNA:   3'- aCACGACGCGCuCGACaa----GUUGUaCG- -5'
26031 3' -51.8 NC_005342.2 + 17739 0.67 0.74909
Target:  5'- gGUGgUGCGCaAGCa-UUCAGCcgGCg -3'
miRNA:   3'- aCACgACGCGcUCGacAAGUUGuaCG- -5'
26031 3' -51.8 NC_005342.2 + 41808 0.78 0.224523
Target:  5'- cGUGCUGCGCGAcgagGCgUGUcgCGAgGUGCg -3'
miRNA:   3'- aCACGACGCGCU----CG-ACAa-GUUgUACG- -5'
26031 3' -51.8 NC_005342.2 + 22912 0.7 0.601384
Target:  5'- gGUGCUGCcgcuCGAGUUGUgCAGCGUa- -3'
miRNA:   3'- aCACGACGc---GCUCGACAaGUUGUAcg -5'
26031 3' -51.8 NC_005342.2 + 47020 0.67 0.74909
Target:  5'- aGUGC-GCGCGAauGCUGcgCcGCAaGCa -3'
miRNA:   3'- aCACGaCGCGCU--CGACaaGuUGUaCG- -5'
26031 3' -51.8 NC_005342.2 + 21786 0.66 0.80158
Target:  5'- aGUGCcGCGCGAGUgg--CAGCugaaaGCg -3'
miRNA:   3'- aCACGaCGCGCUCGacaaGUUGua---CG- -5'
26031 3' -51.8 NC_005342.2 + 2934 0.72 0.457642
Target:  5'- --aGCUGCGCGAGCgUGacgcccgUCAACGgaaUGCc -3'
miRNA:   3'- acaCGACGCGCUCG-ACa------AGUUGU---ACG- -5'
26031 3' -51.8 NC_005342.2 + 9494 0.71 0.567069
Target:  5'- cGUGCgccUGCGCguuuugcucgacGAGCUGcUUCAGCGcgGCa -3'
miRNA:   3'- aCACG---ACGCG------------CUCGAC-AAGUUGUa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.