miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26032 5' -54.6 NC_005342.2 + 42549 1.13 0.000555
Target:  5'- cGCGUUCGCAGAUGCCGACGACGCUGCc -3'
miRNA:   3'- -CGCAAGCGUCUACGGCUGCUGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 8982 0.82 0.08612
Target:  5'- cGCGUUCGCGGcuUGCCaGGCGGCGC-GCu -3'
miRNA:   3'- -CGCAAGCGUCu-ACGG-CUGCUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 4830 0.76 0.215935
Target:  5'- cGCGcgCGCc-GUGCCGAUGcCGCUGCc -3'
miRNA:   3'- -CGCaaGCGucUACGGCUGCuGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 42773 0.76 0.221745
Target:  5'- -aGUUUGCGacGGUGCCGACGccGCGcCUGCa -3'
miRNA:   3'- cgCAAGCGU--CUACGGCUGC--UGC-GACG- -5'
26032 5' -54.6 NC_005342.2 + 39991 0.76 0.221745
Target:  5'- gGCGUUcaucacCGCAGA-GCCGACGACGaagguUGCc -3'
miRNA:   3'- -CGCAA------GCGUCUaCGGCUGCUGCg----ACG- -5'
26032 5' -54.6 NC_005342.2 + 29582 0.75 0.259438
Target:  5'- aGCGcgCGCGGuagucGUCGGCGaaGCGCUGCg -3'
miRNA:   3'- -CGCaaGCGUCua---CGGCUGC--UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 20300 0.75 0.265523
Target:  5'- cGCGacUCGCAGGUGUcaauguuCGcCGACGCUGUg -3'
miRNA:   3'- -CGCa-AGCGUCUACG-------GCuGCUGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 37764 0.75 0.266207
Target:  5'- cGCGcgCaGCuuuGAUGCCGACGGcCGCaUGCg -3'
miRNA:   3'- -CGCaaG-CGu--CUACGGCUGCU-GCG-ACG- -5'
26032 5' -54.6 NC_005342.2 + 45685 0.75 0.273117
Target:  5'- gGCGUgccggccacggCGCAcGAccUGCCGACGgcgaacGCGCUGCg -3'
miRNA:   3'- -CGCAa----------GCGU-CU--ACGGCUGC------UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 5580 0.74 0.294712
Target:  5'- gGCGcugUUGCGGGcUGCuCGACGggagACGCUGCg -3'
miRNA:   3'- -CGCa--AGCGUCU-ACG-GCUGC----UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 29527 0.74 0.307528
Target:  5'- cGCGcUCGCGG-UGUCGACGccgccgaucgcgagGCGUUGCg -3'
miRNA:   3'- -CGCaAGCGUCuACGGCUGC--------------UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 1315 0.73 0.317613
Target:  5'- cGCGaugcUUCGCGGc-GCUcGCGGCGCUGCa -3'
miRNA:   3'- -CGC----AAGCGUCuaCGGcUGCUGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 44185 0.73 0.330365
Target:  5'- aGCGUccgcugCGCAGAUcgcgaagGCCGAucagaacgccacguCGACGCUGUa -3'
miRNA:   3'- -CGCAa-----GCGUCUA-------CGGCU--------------GCUGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 1097 0.72 0.376142
Target:  5'- cGCGaagUCGguGccGUGCUGcgcGCGACGUUGCa -3'
miRNA:   3'- -CGCa--AGCguC--UACGGC---UGCUGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 30493 0.72 0.39415
Target:  5'- aGCGUgagCGCGGcgGCCuuCG-CGUUGCg -3'
miRNA:   3'- -CGCAa--GCGUCuaCGGcuGCuGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 23265 0.72 0.39415
Target:  5'- cGCGcgCGCGGAUcggcaugcaGCUGAuCGGCGCcGCg -3'
miRNA:   3'- -CGCaaGCGUCUA---------CGGCU-GCUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 17938 0.72 0.39415
Target:  5'- gGCG-UCGCAGGUGCgaCGGCGGCcaGCcGCc -3'
miRNA:   3'- -CGCaAGCGUCUACG--GCUGCUG--CGaCG- -5'
26032 5' -54.6 NC_005342.2 + 32971 0.71 0.409888
Target:  5'- uGCGUUCGuCGGAUgauugucaaguucaGCCGAgCGcacGCGUUGCg -3'
miRNA:   3'- -CGCAAGC-GUCUA--------------CGGCU-GC---UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 18482 0.71 0.412706
Target:  5'- gGCGUaccCGCcGcUGCCGGCacgccgacgGACGCUGCa -3'
miRNA:   3'- -CGCAa--GCGuCuACGGCUG---------CUGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 47816 0.71 0.412706
Target:  5'- cGCGaugUCGUGcugcucGGUGCCGACGAgGCgcagGCg -3'
miRNA:   3'- -CGCa--AGCGU------CUACGGCUGCUgCGa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.