miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26032 5' -54.6 NC_005342.2 + 8982 0.82 0.08612
Target:  5'- cGCGUUCGCGGcuUGCCaGGCGGCGC-GCu -3'
miRNA:   3'- -CGCAAGCGUCu-ACGG-CUGCUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 33099 0.69 0.555725
Target:  5'- cCGaUCGCGuagaacggcGAUGCCuGCGGCGCgGCg -3'
miRNA:   3'- cGCaAGCGU---------CUACGGcUGCUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 44137 0.68 0.588529
Target:  5'- cGgGUUCGCu--UGCCGGCG-CGUgcgagGCg -3'
miRNA:   3'- -CgCAAGCGucuACGGCUGCuGCGa----CG- -5'
26032 5' -54.6 NC_005342.2 + 18205 0.66 0.752177
Target:  5'- cGCGgcaUCGCaauacgcgccGGAaaucuacgacGCCGACGgcACGCUGCu -3'
miRNA:   3'- -CGCa--AGCG----------UCUa---------CGGCUGC--UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 32971 0.71 0.409888
Target:  5'- uGCGUUCGuCGGAUgauugucaaguucaGCCGAgCGcacGCGUUGCg -3'
miRNA:   3'- -CGCAAGC-GUCUA--------------CGGCU-GC---UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 18482 0.71 0.412706
Target:  5'- gGCGUaccCGCcGcUGCCGGCacgccgacgGACGCUGCa -3'
miRNA:   3'- -CGCAa--GCGuCuACGGCUG---------CUGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 25408 0.71 0.431792
Target:  5'- cGCGcUUGCAGuGUGCCGGCGguagccgucACGCcugGCg -3'
miRNA:   3'- -CGCaAGCGUC-UACGGCUGC---------UGCGa--CG- -5'
26032 5' -54.6 NC_005342.2 + 9595 0.71 0.441527
Target:  5'- -gGUUgCGCAccGGcUGCCGGCGGCGCgccUGCg -3'
miRNA:   3'- cgCAA-GCGU--CU-ACGGCUGCUGCG---ACG- -5'
26032 5' -54.6 NC_005342.2 + 8659 0.7 0.51288
Target:  5'- gGCGUUCaGCAcggcGAacgUGCCGACcguGACGCcGCu -3'
miRNA:   3'- -CGCAAG-CGU----CU---ACGGCUG---CUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 42949 0.69 0.555725
Target:  5'- uGCGUUCGCA--UGCCcGCGcCGCaucUGCc -3'
miRNA:   3'- -CGCAAGCGUcuACGGcUGCuGCG---ACG- -5'
26032 5' -54.6 NC_005342.2 + 20695 0.69 0.543825
Target:  5'- gGCGUguacggaUCGCAGAcgaaUGCggugaUGACGGCGC-GCg -3'
miRNA:   3'- -CGCA-------AGCGUCU----ACG-----GCUGCUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 32241 0.7 0.51288
Target:  5'- aGCGUUUGCcGAcGUCGcGCGGCGCgcucGCg -3'
miRNA:   3'- -CGCAAGCGuCUaCGGC-UGCUGCGa---CG- -5'
26032 5' -54.6 NC_005342.2 + 4830 0.76 0.215935
Target:  5'- cGCGcgCGCc-GUGCCGAUGcCGCUGCc -3'
miRNA:   3'- -CGCaaGCGucUACGGCUGCuGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 25291 0.69 0.544903
Target:  5'- gGCG-UCGCAaccgggccGAcGCCGGCGACgGCcGCg -3'
miRNA:   3'- -CGCaAGCGU--------CUaCGGCUGCUG-CGaCG- -5'
26032 5' -54.6 NC_005342.2 + 29582 0.75 0.259438
Target:  5'- aGCGcgCGCGGuagucGUCGGCGaaGCGCUGCg -3'
miRNA:   3'- -CGCaaGCGUCua---CGGCUGC--UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 28485 0.7 0.481657
Target:  5'- cGCGUcgaccgCGCGGGU-CgCGGCGGCGCgGCu -3'
miRNA:   3'- -CGCAa-----GCGUCUAcG-GCUGCUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 8485 0.69 0.555725
Target:  5'- cGCGUUCGCgaAGAagucgcccgUGCCGAacaGCGCgaccgGCa -3'
miRNA:   3'- -CGCAAGCG--UCU---------ACGGCUgc-UGCGa----CG- -5'
26032 5' -54.6 NC_005342.2 + 26800 0.69 0.566609
Target:  5'- cGCGcUUCGU---UGCCGACGGCccggcCUGCa -3'
miRNA:   3'- -CGC-AAGCGucuACGGCUGCUGc----GACG- -5'
26032 5' -54.6 NC_005342.2 + 1097 0.72 0.376142
Target:  5'- cGCGaagUCGguGccGUGCUGcgcGCGACGUUGCa -3'
miRNA:   3'- -CGCa--AGCguC--UACGGC---UGCUGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 47816 0.71 0.412706
Target:  5'- cGCGaugUCGUGcugcucGGUGCCGACGAgGCgcagGCg -3'
miRNA:   3'- -CGCa--AGCGU------CUACGGCUGCUgCGa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.